Cre01.g007051

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL40 component

Gene families : OG_01_0001370 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001370_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre01.g007051
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G52590	No alias	ubiquitin extension protein 1	0.12	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g12490.1	No alias	component RPL40 of LSU proteome component	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.16	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25270V3.1	No alias	ubiquitin extension protein 1	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_23170V3.1	No alias	ubiquitin extension protein 1	0.15	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_430V3.1	No alias	ubiquitin extension protein 1	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_25480V3.1	No alias	ubiquitin extension protein 1	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_11930V3.1	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

Cre01.g007051

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation