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  5. AT1G29340

AT1G29340


Description : plant U-box 17


Gene families : OG_01_0000206 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G29340
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AT5G37490 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g11730.1 No alias E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
BP GO:0009626 plant-type hypersensitive response IGI Interproscan
BP GO:0016567 protein ubiquitination IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
CC GO:0000145 exocyst IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000165 MAPK cascade IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0004697 protein kinase C activity IEP HCCA
MF GO:0004698 calcium-dependent protein kinase C activity IEP HCCA
MF GO:0004709 MAP kinase kinase kinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005262 calcium channel activity IEP HCCA
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006882 cellular zinc ion homeostasis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006900 vesicle budding from membrane IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007231 osmosensory signaling pathway IEP HCCA
BP GO:0007568 aging IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009694 jasmonic acid metabolic process IEP HCCA
BP GO:0009695 jasmonic acid biosynthetic process IEP HCCA
BP GO:0009696 salicylic acid metabolic process IEP HCCA
BP GO:0009697 salicylic acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010449 root meristem growth IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0010857 calcium-dependent protein kinase activity IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016045 detection of bacterium IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016165 linoleate 13S-lipoxygenase activity IEP HCCA
MF GO:0016174 NAD(P)H oxidase H2O2-forming activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017077 oxidative phosphorylation uncoupler activity IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0022622 root system development IEP HCCA
CC GO:0030173 integral component of Golgi membrane IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
CC GO:0031228 intrinsic component of Golgi membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0031348 negative regulation of defense response IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0033500 carbohydrate homeostasis IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034250 positive regulation of cellular amide metabolic process IEP HCCA
BP GO:0034406 cell wall beta-glucan metabolic process IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0042537 benzene-containing compound metabolic process IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
CC GO:0043230 extracellular organelle IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048194 Golgi vesicle budding IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0051753 mannan synthase activity IEP HCCA
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0055069 zinc ion homeostasis IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0065010 extracellular membrane-bounded organelle IEP HCCA
CC GO:0070062 extracellular exosome IEP HCCA
BP GO:0070417 cellular response to cold IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080086 stamen filament development IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098543 detection of other organism IEP HCCA
BP GO:0098581 detection of external biotic stimulus IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902065 response to L-glutamate IEP HCCA
CC GO:1903561 extracellular vesicle IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 305 373
IPR000225 Armadillo 438 476
PLAZA 3.0 Dicots AT1G29340