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Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS6 component
Gene families : OG_01_0001326 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre09.g400650 | |
| Cluster | HCCA: Cluster_17 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G31700 | No alias | ribosomal protein S6 | 0.19 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G10360 | No alias | Ribosomal protein S6e | 0.24 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp4g01750.1 | No alias | component RPS6 of SSU proteome | 0.26 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c11_21120V3.1 | No alias | Ribosomal protein S6e | 0.24 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c15_25430V3.1 | No alias | Ribosomal protein S6e | 0.15 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c15_25780V3.1 | No alias | Ribosomal protein S6e | 0.18 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c15_25810V3.1 | No alias | ribosomal protein S6 | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c7_5780V3.1 | No alias | Ribosomal protein S6e | 0.19 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_06832.1 | No alias | component eS6 of SSU proteome | 0.1 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001377 | Ribosomal_S6e | 1 | 128 |
| No external refs found! |