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  5. Cre10.g417700

Cre10.g417700


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG_01_0002090 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cre10.g417700
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT1G43170 No alias ribosomal protein 1 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25460V3.1 No alias R-protein L3 B 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_27000V3.1 No alias R-protein L3 B 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_27030V3.1 No alias R-protein L3 B 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_11939.1 No alias component uL3 of LSU proteome component 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 367
No external refs found!