AT1G04820

Description : tubulin alpha-4 chain

Gene families : OG_01_0000395 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G04820
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g190950	No alias	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g23500.1	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g00550.1	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_2000V3.1	No alias	tubulin alpha-2 chain	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_02218.1	No alias	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006084	acetyl-CoA metabolic process	RCA	Interproscan
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006637	acyl-CoA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0007017	microtubule-based process	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035383	thioester metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0045298	tubulin complex	ISS	Interproscan
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071258	cellular response to gravity	IMP	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
BP	GO:0000820	regulation of glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0002229	defense response to oomycetes	IEP	HCCA
BP	GO:0002239	response to oomycetes	IEP	HCCA
MF	GO:0003865	3-oxo-5-alpha-steroid 4-dehydrogenase activity	IEP	HCCA
MF	GO:0003878	ATP citrate synthase activity	IEP	HCCA
MF	GO:0004128	cytochrome-b5 reductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0004312	fatty acid synthase activity	IEP	HCCA
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	HCCA
MF	GO:0004496	mevalonate kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005797	Golgi medial cisterna	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006907	pinocytosis	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009346	ATP-independent citrate lyase complex	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
MF	GO:0009922	fatty acid elongase activity	IEP	HCCA
CC	GO:0009923	fatty acid elongase complex	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010025	wax biosynthetic process	IEP	HCCA
BP	GO:0010026	trichome differentiation	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010160	formation of animal organ boundary	IEP	HCCA
BP	GO:0010166	wax metabolic process	IEP	HCCA
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010442	guard cell morphogenesis	IEP	HCCA
BP	GO:0010541	acropetal auxin transport	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
CC	GO:0016021	integral component of membrane	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
MF	GO:0016653	oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016872	intramolecular lyase activity	IEP	HCCA
MF	GO:0017057	6-phosphogluconolactonase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019166	trans-2-enoyl-CoA reductase (NADPH) activity	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
CC	GO:0031224	intrinsic component of membrane	IEP	HCCA
CC	GO:0031225	anchored component of membrane	IEP	HCCA
CC	GO:0031226	intrinsic component of plasma membrane	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
CC	GO:0031985	Golgi cisterna	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	HCCA
BP	GO:0033239	negative regulation of cellular amine metabolic process	IEP	HCCA
MF	GO:0033765	steroid dehydrogenase activity, acting on the CH-CH group of donors	IEP	HCCA
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0035384	thioester biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042126	nitrate metabolic process	IEP	HCCA
BP	GO:0042128	nitrate assimilation	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045763	negative regulation of cellular amino acid metabolic process	IEP	HCCA
CC	GO:0046658	anchored component of plasma membrane	IEP	HCCA
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	HCCA
MF	GO:0047793	cycloeucalenol cycloisomerase activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051775	response to redox state	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071461	cellular response to redox state	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:0120178	steroid hormone biosynthetic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901568	fatty acid derivative metabolic process	IEP	HCCA
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1902005	regulation of proline biosynthetic process	IEP	HCCA
BP	GO:1902006	negative regulation of proline biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:2000214	regulation of proline metabolic process	IEP	HCCA
BP	GO:2000215	negative regulation of proline metabolic process	IEP	HCCA
BP	GO:2000282	regulation of cellular amino acid biosynthetic process	IEP	HCCA
BP	GO:2000283	negative regulation of cellular amino acid biosynthetic process	IEP	HCCA
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	263	392
IPR003008	Tubulin_FtsZ_GTPase	3	213

External Links

PLAZA 3.0 Dicots	AT1G04820

AT1G04820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation