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Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component
Gene families : OG_01_0001081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001081_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre14.g630100 | |
| Cluster | HCCA: Cluster_17 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G49010 | No alias | breast basic conserved 1 | 0.15 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G23900 | No alias | Ribosomal protein L13e family protein | 0.08 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp1g04920.1 | No alias | component RPL13 of LSU proteome component | 0.12 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp2g19790.1 | No alias | component RPL13 of LSU proteome component | 0.13 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c10_7370V3.1 | No alias | breast basic conserved 1 | 0.09 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c13_15900V3.1 | No alias | breast basic conserved 1 | 0.12 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c1_26280V3.1 | No alias | breast basic conserved 1 | 0.12 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_04606.1 | No alias | component eL13 of LSU proteome component | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001380 | Ribosomal_L13e | 7 | 196 |
| No external refs found! |