AT1G53500

Description : NAD-dependent epimerase/dehydratase family protein

Gene families : OG_01_0001681 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001681_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G53500
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g083800	No alias	Trifunctional UDP-glucose...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g02720.1	No alias	UDP-L-rhamnose synthase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_10340V3.1	No alias	rhamnose biosynthesis 1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_10782.1	No alias	UDP-L-rhamnose synthase (RHM)	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	None	Extended
BP	GO:0009226	nucleotide-sugar biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010191	mucilage metabolic process	None	Extended
BP	GO:0010192	mucilage biosynthetic process	IMP	Interproscan
BP	GO:0010214	seed coat development	IMP	Interproscan
BP	GO:0010253	UDP-rhamnose biosynthetic process	IDA	Interproscan
MF	GO:0010280	UDP-L-rhamnose synthase activity	IDA	Interproscan
MF	GO:0010280	UDP-L-rhamnose synthase activity	ISS	Interproscan
MF	GO:0010489	UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	TAS	Interproscan
MF	GO:0010490	UDP-4-keto-rhamnose-4-keto-reductase activity	TAS	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016854	racemase and epimerase activity	None	Extended
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033478	UDP-rhamnose metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IDA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001944	vasculature development	IEP	HCCA
MF	GO:0004126	cytidine deaminase activity	IEP	HCCA
MF	GO:0004707	MAP kinase activity	IEP	HCCA
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	HCCA
BP	GO:0006216	cytidine catabolic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0009119	ribonucleoside metabolic process	IEP	HCCA
BP	GO:0009164	nucleoside catabolic process	IEP	HCCA
BP	GO:0009972	cytidine deamination	IEP	HCCA
MF	GO:0015662	P-type ion transporter activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
CC	GO:0031012	extracellular matrix	IEP	HCCA
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	HCCA
MF	GO:0042409	caffeoyl-CoA O-methyltransferase activity	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0042454	ribonucleoside catabolic process	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
BP	GO:0046087	cytidine metabolic process	IEP	HCCA
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	HCCA
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	HCCA
BP	GO:0071241	cellular response to inorganic substance	IEP	HCCA
BP	GO:0071248	cellular response to metal ion	IEP	HCCA
BP	GO:0071281	cellular response to iron ion	IEP	HCCA
BP	GO:0071369	cellular response to ethylene stimulus	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	HCCA
BP	GO:0120178	steroid hormone biosynthetic process	IEP	HCCA
MF	GO:0140358	P-type transmembrane transporter activity	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901658	glycosyl compound catabolic process	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029903	RmlD-like-bd	384	556
IPR016040	NAD(P)-bd_dom	12	317

External Links

PLAZA 3.0 Dicots	AT1G53500

AT1G53500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation