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  5. Mp2g04620.1

Mp2g04620.1


Description : Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana (sp|q9s7q2|pp124_arath : 276.0)


Gene families : OG_01_0011024 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g04620.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Pp3c8_15500V3.1 No alias plastid transcriptionally active 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 621 668
IPR002885 Pentatricopeptide_repeat 411 458
IPR002885 Pentatricopeptide_repeat 305 354
IPR002885 Pentatricopeptide_repeat 516 565
IPR002885 Pentatricopeptide_repeat 583 614
IPR002885 Pentatricopeptide_repeat 372 405
IPR002885 Pentatricopeptide_repeat 484 512
No external refs found!