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  5. AT1G62590

AT1G62590


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0000231 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G62590
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G12700 No alias ATP binding;nucleic acid binding;helicases 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62670 No alias rna processing factor 2 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G63130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G64580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004016 adenylate cyclase activity IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019948 SUMO activating enzyme activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 167
IPR002885 Pentatricopeptide_repeat 398 446
IPR002885 Pentatricopeptide_repeat 188 237
IPR002885 Pentatricopeptide_repeat 471 517
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 538 585
IPR002885 Pentatricopeptide_repeat 328 376
PLAZA 3.0 Dicots AT1G62590