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  5. AT1G63780

AT1G63780


Description : Ribosomal RNA processing Brix domain protein


Gene families : OG_01_0003914 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63780
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Mp2g04740.1 No alias SSU processome assembly factor (IMP4) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing RCA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus TAS Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex TAS Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006364 rRNA processing TAS Interproscan
CC GO:0015030 Cajal body TAS Interproscan
CC GO:0016363 nuclear matrix IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004799 thymidylate synthase activity IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009256 10-formyltetrahydrofolate metabolic process IEP HCCA
BP GO:0009257 10-formyltetrahydrofolate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010022 meristem determinacy IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010220 positive regulation of vernalization response IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045039 protein insertion into mitochondrial inner membrane IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051204 protein insertion into mitochondrial membrane IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090069 regulation of ribosome biogenesis IEP HCCA
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000232 regulation of rRNA processing IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 90 261
PLAZA 3.0 Dicots AT1G63780