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  5. AT1G76950

AT1G76950


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0000631 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000631_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G76950
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4760V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06656.1 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001763 morphogenesis of a branching structure IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010065 primary meristem tissue development IEP HCCA
BP GO:0010068 protoderm histogenesis IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040014 regulation of multicellular organism growth IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0043966 histone H3 acetylation IEP HCCA
BP GO:0043967 histone H4 acetylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048508 embryonic meristem development IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048645 animal organ formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0048768 root hair cell tip growth IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
CC GO:0070971 endoplasmic reticulum exit site IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
BP GO:0090342 regulation of cell aging IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 471 518
IPR000408 Reg_chr_condens 577 624
IPR000408 Reg_chr_condens 300 349
IPR000408 Reg_chr_condens 408 456
IPR000408 Reg_chr_condens 353 404
IPR000408 Reg_chr_condens 523 572
IPR027988 BRX_N 879 908
IPR001849 PH_domain 15 123
IPR000306 Znf_FYVE 628 694
IPR013591 Brevis_radix_dom 1022 1077
PLAZA 3.0 Dicots AT1G76950