AT1G79850

Description : ribosomal protein S17

Gene families : OG_01_0001330 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001330_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79850
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g118950	No alias	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g05080.1	No alias	component psRPS17 of small ribosomal subunit proteome	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_14630V3.1	No alias	ribosomal protein S17	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_12860V3.1	No alias	ribosomal protein S17	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000312	plastid small ribosomal subunit	ISS	Interproscan
CC	GO:0000314	organellar small ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032544	plastid translation	IMP	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
CC	GO:0000313	organellar ribosome	IEP	HCCA
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
BP	GO:0000373	Group II intron splicing	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0003913	DNA photolyase activity	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	transcription, DNA-templated	IEP	HCCA
BP	GO:0006354	DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006520	cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
CC	GO:0009547	plastid ribosome	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0010020	chloroplast fission	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0010236	plastoquinone biosynthetic process	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0030095	chloroplast photosystem II	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034622	cellular protein-containing complex assembly	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043572	plastid fission	IEP	HCCA
BP	GO:0043933	protein-containing complex subunit organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
MF	GO:0051741	2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0090143	nucleoid organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090391	granum assembly	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	55	119

External Links

PLAZA 3.0 Dicots	AT1G79850

AT1G79850

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation