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  5. Pp3c1_25000V3.1

Pp3c1_25000V3.1


Description : Translation protein SH3-like family protein


Gene families : OG_01_0001058 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_25000V3.1
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT3G49910 No alias Translation protein SH3-like family protein 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G67510 No alias Translation protein SH3-like family protein 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g040000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g12870.1 No alias component RPL26 of LSU proteome component 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_15910V3.1 No alias Translation protein SH3-like family protein 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03686.1 No alias component uL24 of LSU proteome component 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
CC GO:0015934 large ribosomal subunit IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
IPR005824 KOW 51 82
No external refs found!