Pp3c9_12710V3.1

Description : DNA-directed RNA polymerase family protein

Gene families : OG_01_0000388 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000388_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c9_12710V3.1
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
Pp3c10_11530V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19410V3.1	No alias	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10710V3.1	No alias	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_6070V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12270V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_3310V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_8540V3.1	No alias	nuclear RNA polymerase C2	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_15140V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_35890V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_37780V3.1	No alias	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14800V3.1	No alias	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24950V3.1	No alias	nuclear RNA polymerase C2	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_18580V3.1	No alias	nuclear RNA polymerase A2	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12670V3.1	No alias	DNA-directed RNA polymerase family protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17790V3.1	No alias	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006134	DNA-dir_DNA_pol_B_multi_dom	19	106
IPR007641	RNA_pol_Rpb2_7	580	662
IPR007120	DNA-dir_RNAP_su2_dom	225	578

External Links

No external refs found!

Pp3c9_12710V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation