Coexpression cluster: Cluster_15 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 44.87% (105/234) 0.74 0.0 1e-06
GO:0003824 catalytic activity 29.06% (68/234) 0.97 0.0 3e-06
GO:0043647 inositol phosphate metabolic process 1.71% (4/234) 5.26 2e-06 0.0003
GO:0008150 biological_process 27.78% (65/234) 0.78 4e-06 0.00045
GO:0005488 binding 26.07% (61/234) 0.75 1.9e-05 0.000915
GO:0019751 polyol metabolic process 1.71% (4/234) 4.52 2.2e-05 0.000923
GO:0008152 metabolic process 20.51% (48/234) 0.88 1.9e-05 0.001004
GO:0009451 RNA modification 2.14% (5/234) 3.8 2.7e-05 0.001029
GO:0071704 organic substance metabolic process 19.23% (45/234) 0.94 1.3e-05 0.001118
GO:0044238 primary metabolic process 17.95% (42/234) 0.97 1.9e-05 0.00113
GO:0005975 carbohydrate metabolic process 5.56% (13/234) 2.05 1.7e-05 0.00122
GO:0016798 hydrolase activity, acting on glycosyl bonds 4.27% (10/234) 2.23 6e-05 0.001334
GO:0031224 intrinsic component of membrane 5.98% (14/234) 1.79 5.9e-05 0.001401
GO:0071545 inositol phosphate catabolic process 1.28% (3/234) 5.02 8.3e-05 0.001459
GO:0046855 inositol phosphate dephosphorylation 1.28% (3/234) 5.02 8.3e-05 0.001459
GO:0046838 phosphorylated carbohydrate dephosphorylation 1.28% (3/234) 5.02 8.3e-05 0.001459
GO:0009987 cellular process 20.94% (49/234) 0.82 4.9e-05 0.00147
GO:0097159 organic cyclic compound binding 17.52% (41/234) 0.91 5.9e-05 0.00147
GO:1901363 heterocyclic compound binding 17.52% (41/234) 0.91 5.9e-05 0.00147
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 4.27% (10/234) 2.25 5.2e-05 0.001471
GO:0016070 RNA metabolic process 5.13% (12/234) 2.02 4.6e-05 0.001485
GO:0019637 organophosphate metabolic process 3.42% (8/234) 2.54 7.5e-05 0.001522
GO:0006066 alcohol metabolic process 1.71% (4/234) 4.11 7.4e-05 0.001565
GO:0016021 integral component of membrane 5.98% (14/234) 1.83 4.5e-05 0.001585
GO:0016311 dephosphorylation 1.71% (4/234) 3.91 0.000131 0.001855
GO:1901615 organic hydroxy compound metabolic process 1.71% (4/234) 3.91 0.000131 0.001855
GO:0003676 nucleic acid binding 9.83% (23/234) 1.24 0.000124 0.001873
GO:1901616 organic hydroxy compound catabolic process 1.28% (3/234) 4.85 0.000123 0.001929
GO:0046174 polyol catabolic process 1.28% (3/234) 4.85 0.000123 0.001929
GO:0046164 alcohol catabolic process 1.28% (3/234) 4.85 0.000123 0.001929
GO:0006325 chromatin organization 1.28% (3/234) 4.69 0.000174 0.00238
GO:0005575 cellular_component 13.25% (31/234) 0.99 0.000198 0.002628
GO:0016787 hydrolase activity 10.68% (25/234) 1.13 0.000216 0.002779
GO:0044237 cellular metabolic process 14.96% (35/234) 0.89 0.000304 0.003786
GO:0006396 RNA processing 2.99% (7/234) 2.42 0.000351 0.004258
GO:0022853 active ion transmembrane transporter activity 1.71% (4/234) 3.52 0.000381 0.004369
GO:0015297 antiporter activity 1.71% (4/234) 3.52 0.000381 0.004369
GO:0046434 organophosphate catabolic process 1.28% (3/234) 4.31 0.000404 0.004394
GO:0006725 cellular aromatic compound metabolic process 6.84% (16/234) 1.41 0.000397 0.004425
GO:0046483 heterocycle metabolic process 6.84% (16/234) 1.39 0.00044 0.004666
GO:0006139 nucleobase-containing compound metabolic process 6.41% (15/234) 1.45 0.000459 0.004751
GO:0043413 macromolecule glycosylation 1.71% (4/234) 3.43 0.000491 0.004844
GO:0006486 protein glycosylation 1.71% (4/234) 3.43 0.000491 0.004844
GO:0090304 nucleic acid metabolic process 5.56% (13/234) 1.56 0.000523 0.005038
GO:1901360 organic cyclic compound metabolic process 6.84% (16/234) 1.36 0.000573 0.005402
GO:0015291 secondary active transmembrane transporter activity 1.71% (4/234) 3.3 0.000696 0.006416
GO:0043167 ion binding 14.1% (33/234) 0.85 0.000711 0.006417
GO:0004594 pantothenate kinase activity 0.85% (2/234) 5.43 0.000791 0.006847
GO:0000786 nucleosome 0.85% (2/234) 5.43 0.000791 0.006847
GO:0070085 glycosylation 1.71% (4/234) 3.22 0.000862 0.007312
GO:0009982 pseudouridine synthase activity 1.28% (3/234) 3.93 0.000929 0.00772
GO:0003677 DNA binding 4.7% (11/234) 1.6 0.001121 0.009141
GO:0034641 cellular nitrogen compound metabolic process 7.69% (18/234) 1.17 0.00118 0.009438
GO:0032993 protein-DNA complex 0.85% (2/234) 5.11 0.001309 0.009735
GO:0015299 solute:proton antiporter activity 1.28% (3/234) 3.77 0.001301 0.009848
GO:0001522 pseudouridine synthesis 1.28% (3/234) 3.77 0.001301 0.009848
GO:0015298 solute:cation antiporter activity 1.28% (3/234) 3.77 0.001301 0.009848
GO:0044282 small molecule catabolic process 1.28% (3/234) 3.69 0.001517 0.010904
GO:0090407 organophosphate biosynthetic process 2.14% (5/234) 2.58 0.001496 0.010934
GO:0044262 cellular carbohydrate metabolic process 1.71% (4/234) 2.97 0.001664 0.011756
GO:0016740 transferase activity 10.68% (25/234) 0.92 0.001714 0.011916
GO:0110165 cellular anatomical entity 10.26% (24/234) 0.93 0.001849 0.012645
GO:0015936 coenzyme A metabolic process 0.85% (2/234) 4.62 0.002707 0.0151
GO:0034033 purine nucleoside bisphosphate biosynthetic process 0.85% (2/234) 4.62 0.002707 0.0151
GO:0015937 coenzyme A biosynthetic process 0.85% (2/234) 4.62 0.002707 0.0151
GO:0006334 nucleosome assembly 0.85% (2/234) 4.62 0.002707 0.0151
GO:0044815 DNA packaging complex 0.85% (2/234) 4.62 0.002707 0.0151
GO:0065004 protein-DNA complex assembly 0.85% (2/234) 4.62 0.002707 0.0151
GO:0033866 nucleoside bisphosphate biosynthetic process 0.85% (2/234) 4.62 0.002707 0.0151
GO:0034030 ribonucleoside bisphosphate biosynthetic process 0.85% (2/234) 4.62 0.002707 0.0151
GO:0005524 ATP binding 8.55% (20/234) 0.99 0.002854 0.015714
GO:0008168 methyltransferase activity 2.56% (6/234) 2.1 0.002896 0.015743
GO:0035639 purine ribonucleoside triphosphate binding 9.4% (22/234) 0.96 0.002353 0.015836
GO:0032553 ribonucleotide binding 9.4% (22/234) 0.93 0.003006 0.016134
GO:0032559 adenyl ribonucleotide binding 8.55% (20/234) 0.98 0.003164 0.016771
GO:0017076 purine nucleotide binding 9.4% (22/234) 0.94 0.002695 0.016807
GO:0015078 proton transmembrane transporter activity 1.71% (4/234) 2.79 0.002674 0.016919
GO:0034470 ncRNA processing 1.71% (4/234) 2.79 0.002674 0.016919
GO:0008173 RNA methyltransferase activity 1.28% (3/234) 3.43 0.002603 0.016982
GO:0030554 adenyl nucleotide binding 8.55% (20/234) 0.97 0.003246 0.016994
GO:0032555 purine ribonucleotide binding 9.4% (22/234) 0.94 0.002598 0.017212
GO:0071824 protein-DNA complex subunit organization 0.85% (2/234) 4.43 0.003581 0.018077
GO:0034728 nucleosome organization 0.85% (2/234) 4.43 0.003581 0.018077
GO:0006338 chromatin remodeling 0.85% (2/234) 4.43 0.003581 0.018077
GO:0097367 carbohydrate derivative binding 9.4% (22/234) 0.9 0.003676 0.018124
GO:0016866 intramolecular transferase activity 1.28% (3/234) 3.26 0.003667 0.018294
GO:0043168 anion binding 9.83% (23/234) 0.87 0.0038 0.018519
GO:0044281 small molecule metabolic process 3.85% (9/234) 1.54 0.003995 0.019034
GO:0034660 ncRNA metabolic process 2.14% (5/234) 2.26 0.003972 0.01914
GO:0016741 transferase activity, transferring one-carbon groups 2.56% (6/234) 1.99 0.004125 0.019432
GO:1901265 nucleoside phosphate binding 9.83% (23/234) 0.86 0.004437 0.020449
GO:0000166 nucleotide binding 9.83% (23/234) 0.86 0.004437 0.020449
GO:0016853 isomerase activity 2.14% (5/234) 2.14 0.005699 0.025704
GO:0032040 small-subunit processome 0.85% (2/234) 4.11 0.005668 0.025842
GO:0033865 nucleoside bisphosphate metabolic process 0.85% (2/234) 3.85 0.008187 0.035065
GO:0033875 ribonucleoside bisphosphate metabolic process 0.85% (2/234) 3.85 0.008187 0.035065
GO:0030684 preribosome 0.85% (2/234) 3.85 0.008187 0.035065
GO:0034032 purine nucleoside bisphosphate metabolic process 0.85% (2/234) 3.85 0.008187 0.035065
GO:0036094 small molecule binding 9.83% (23/234) 0.78 0.008028 0.035829
GO:0032958 inositol phosphate biosynthetic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0090482 vitamin transmembrane transporter activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0019682 glyceraldehyde-3-phosphate metabolic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0030674 protein-macromolecule adaptor activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0050497 alkylthioltransferase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0050043 lactate racemase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0005484 SNAP receptor activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor 0.43% (1/234) 6.43 0.011597 0.038719
GO:0035596 methylthiotransferase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0003885 D-arabinono-1,4-lactone oxidase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0051180 vitamin transport 0.43% (1/234) 6.43 0.011597 0.038719
GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives 0.43% (1/234) 6.43 0.011597 0.038719
GO:0006784 heme A biosynthetic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0009240 isopentenyl diphosphate biosynthetic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 0.43% (1/234) 6.43 0.011597 0.038719
GO:0046160 heme a metabolic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0050993 dimethylallyl diphosphate metabolic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0050992 dimethylallyl diphosphate biosynthetic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 0.43% (1/234) 6.43 0.011597 0.038719
GO:0006420 arginyl-tRNA aminoacylation 0.43% (1/234) 6.43 0.011597 0.038719
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor 0.43% (1/234) 6.43 0.011597 0.038719
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0004814 arginine-tRNA ligase activity 0.43% (1/234) 6.43 0.011597 0.038719
GO:0046490 isopentenyl diphosphate metabolic process 0.43% (1/234) 6.43 0.011597 0.038719
GO:0022804 active transmembrane transporter activity 2.14% (5/234) 1.97 0.00919 0.038966
GO:0006793 phosphorus metabolic process 5.56% (13/234) 1.03 0.012259 0.040294
GO:0006796 phosphate-containing compound metabolic process 5.56% (13/234) 1.03 0.012259 0.040294
GO:0015318 inorganic molecular entity transmembrane transporter activity 2.14% (5/234) 1.86 0.01262 0.041162
GO:0003723 RNA binding 2.99% (7/234) 1.56 0.009909 0.041598
GO:0016020 membrane 4.27% (10/234) 1.25 0.01012 0.042066
GO:0006807 nitrogen compound metabolic process 11.97% (28/234) 0.63 0.013896 0.044977
GO:0022890 inorganic cation transmembrane transporter activity 1.71% (4/234) 2.11 0.014034 0.045078
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_76 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_7 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_116 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_147 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_33 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_55 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_88 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_125 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_129 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_148 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_175 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_292 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_20 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (234) (download table)

InterPro Domains

GO Terms

Family Terms