Coexpression cluster: Cluster_146 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 18.94% (25/132) 2.33 0.0 0.0
GO:0090304 nucleic acid metabolic process 12.88% (17/132) 2.78 0.0 0.0
GO:0051716 cellular response to stimulus 6.06% (8/132) 4.2 0.0 0.0
GO:0006974 cellular response to DNA damage stimulus 6.06% (8/132) 4.2 0.0 0.0
GO:0033554 cellular response to stress 6.06% (8/132) 4.2 0.0 0.0
GO:0006281 DNA repair 6.06% (8/132) 4.32 0.0 1e-06
GO:0005488 binding 39.39% (52/132) 1.1 0.0 1e-06
GO:0006139 nucleobase-containing compound metabolic process 12.88% (17/132) 2.49 0.0 1e-06
GO:0046483 heterocycle metabolic process 12.88% (17/132) 2.34 0.0 1e-06
GO:0006725 cellular aromatic compound metabolic process 12.88% (17/132) 2.34 0.0 1e-06
GO:1901360 organic cyclic compound metabolic process 12.88% (17/132) 2.29 0.0 2e-06
GO:0097159 organic cyclic compound binding 26.52% (35/132) 1.37 0.0 3e-06
GO:1901363 heterocyclic compound binding 26.52% (35/132) 1.37 0.0 3e-06
GO:0003674 molecular_function 53.79% (71/132) 0.75 0.0 4e-06
GO:0006259 DNA metabolic process 6.06% (8/132) 3.66 0.0 5e-06
GO:0006260 DNA replication 3.79% (5/132) 5.0 0.0 8e-06
GO:0034641 cellular nitrogen compound metabolic process 13.64% (18/132) 2.02 0.0 9e-06
GO:0043170 macromolecule metabolic process 19.7% (26/132) 1.55 1e-06 1.1e-05
GO:0046907 intracellular transport 5.3% (7/132) 3.6 2e-06 3.1e-05
GO:0008104 protein localization 5.3% (7/132) 3.55 2e-06 3.1e-05
GO:0045184 establishment of protein localization 5.3% (7/132) 3.55 2e-06 3.1e-05
GO:0033036 macromolecule localization 5.3% (7/132) 3.55 2e-06 3.1e-05
GO:0051649 establishment of localization in cell 5.3% (7/132) 3.57 2e-06 3.3e-05
GO:0015031 protein transport 5.3% (7/132) 3.57 2e-06 3.3e-05
GO:0051641 cellular localization 5.3% (7/132) 3.47 3e-06 4.4e-05
GO:0000166 nucleotide binding 15.91% (21/132) 1.62 4e-06 5.3e-05
GO:1901265 nucleoside phosphate binding 15.91% (21/132) 1.62 4e-06 5.3e-05
GO:0140640 catalytic activity, acting on a nucleic acid 6.82% (9/132) 2.85 5e-06 5.5e-05
GO:0006886 intracellular protein transport 4.55% (6/132) 3.72 6e-06 6.6e-05
GO:0140513 nuclear protein-containing complex 4.55% (6/132) 3.72 6e-06 6.6e-05
GO:0035639 purine ribonucleoside triphosphate binding 14.39% (19/132) 1.7 6e-06 6.8e-05
GO:0140097 catalytic activity, acting on DNA 3.79% (5/132) 4.2 7e-06 7.5e-05
GO:0036094 small molecule binding 15.91% (21/132) 1.55 9e-06 9e-05
GO:0005524 ATP binding 12.88% (17/132) 1.76 1.1e-05 0.000107
GO:0032555 purine ribonucleotide binding 14.39% (19/132) 1.63 1.1e-05 0.00011
GO:0017076 purine nucleotide binding 14.39% (19/132) 1.62 1.2e-05 0.000111
GO:0032553 ribonucleotide binding 14.39% (19/132) 1.62 1.3e-05 0.000116
GO:0071705 nitrogen compound transport 5.3% (7/132) 3.14 1.5e-05 0.000128
GO:0043168 anion binding 15.15% (20/132) 1.55 1.5e-05 0.000131
GO:0003677 DNA binding 7.58% (10/132) 2.45 1.6e-05 0.000132
GO:0097367 carbohydrate derivative binding 14.39% (19/132) 1.59 1.7e-05 0.000136
GO:0071702 organic substance transport 5.3% (7/132) 3.09 1.9e-05 0.000148
GO:0032559 adenyl ribonucleotide binding 12.88% (17/132) 1.68 2.2e-05 0.000171
GO:0030554 adenyl nucleotide binding 12.88% (17/132) 1.68 2.3e-05 0.000173
GO:0006807 nitrogen compound metabolic process 18.18% (24/132) 1.3 3.4e-05 0.000245
GO:0009987 cellular process 25.0% (33/132) 1.04 3.7e-05 0.000267
GO:0005634 nucleus 4.55% (6/132) 3.23 4.4e-05 0.000307
GO:0044237 cellular metabolic process 18.94% (25/132) 1.22 5.5e-05 0.000375
GO:0043167 ion binding 18.94% (25/132) 1.2 7.2e-05 0.000483
GO:0006298 mismatch repair 2.27% (3/132) 5.09 8.4e-05 0.000539
GO:0030983 mismatched DNA binding 2.27% (3/132) 5.09 8.4e-05 0.000539
GO:0016070 RNA metabolic process 6.82% (9/132) 2.27 0.000109 0.000687
GO:0043138 3'-5' DNA helicase activity 1.52% (2/132) 6.62 0.000137 0.00085
GO:0008168 methyltransferase activity 5.3% (7/132) 2.63 0.000141 0.000861
GO:0071704 organic substance metabolic process 20.45% (27/132) 1.07 0.000149 0.000894
GO:0043231 intracellular membrane-bounded organelle 4.55% (6/132) 2.87 0.000178 0.001048
GO:0016741 transferase activity, transferring one-carbon groups 5.3% (7/132) 2.57 0.000189 0.001072
GO:0043227 membrane-bounded organelle 4.55% (6/132) 2.86 0.000187 0.001077
GO:0006396 RNA processing 4.55% (6/132) 2.83 0.000204 0.001137
GO:0008150 biological_process 30.3% (40/132) 0.79 0.00023 0.001262
GO:0017056 structural constituent of nuclear pore 1.52% (2/132) 6.2 0.000273 0.001424
GO:0005680 anaphase-promoting complex 1.52% (2/132) 6.2 0.000273 0.001424
GO:0000152 nuclear ubiquitin ligase complex 1.52% (2/132) 6.2 0.000273 0.001424
GO:0008152 metabolic process 21.21% (28/132) 0.99 0.000294 0.001511
GO:0044238 primary metabolic process 18.94% (25/132) 1.05 0.000335 0.001669
GO:0003723 RNA binding 5.3% (7/132) 2.43 0.000334 0.001689
GO:0031461 cullin-RING ubiquitin ligase complex 1.52% (2/132) 5.88 0.000452 0.002221
GO:0000151 ubiquitin ligase complex 1.52% (2/132) 5.62 0.000676 0.003221
GO:0006950 response to stress 6.06% (8/132) 2.07 0.000666 0.003222
GO:0006913 nucleocytoplasmic transport 1.52% (2/132) 5.39 0.000942 0.00413
GO:0051169 nuclear transport 1.52% (2/132) 5.39 0.000942 0.00413
GO:0017038 protein import 1.52% (2/132) 5.39 0.000942 0.00413
GO:0005643 nuclear pore 1.52% (2/132) 5.39 0.000942 0.00413
GO:0003690 double-stranded DNA binding 2.27% (3/132) 3.98 0.000888 0.004173
GO:1990234 transferase complex 2.27% (3/132) 3.93 0.000985 0.00421
GO:0140535 intracellular protein-containing complex 2.27% (3/132) 3.93 0.000985 0.00421
GO:0044260 cellular macromolecule metabolic process 12.12% (16/132) 1.27 0.000937 0.004342
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.52% (2/132) 5.2 0.00125 0.00514
GO:0000398 mRNA splicing, via spliceosome 1.52% (2/132) 5.2 0.00125 0.00514
GO:0000375 RNA splicing, via transesterification reactions 1.52% (2/132) 5.2 0.00125 0.00514
GO:0004386 helicase activity 2.27% (3/132) 3.74 0.001443 0.005859
GO:0050896 response to stimulus 6.06% (8/132) 1.89 0.001506 0.006044
GO:0006284 base-excision repair 1.52% (2/132) 5.03 0.0016 0.006341
GO:0016071 mRNA metabolic process 2.27% (3/132) 3.58 0.002014 0.007888
GO:0003678 DNA helicase activity 1.52% (2/132) 4.5 0.003405 0.013026
GO:0008380 RNA splicing 1.52% (2/132) 4.5 0.003405 0.013026
GO:0005515 protein binding 12.88% (17/132) 1.02 0.004149 0.015689
GO:0008173 RNA methyltransferase activity 1.52% (2/132) 4.29 0.004543 0.016984
GO:0043229 intracellular organelle 5.3% (7/132) 1.77 0.004714 0.017425
GO:0043226 organelle 5.3% (7/132) 1.76 0.004798 0.01754
GO:0016579 protein deubiquitination 1.52% (2/132) 4.2 0.005169 0.018485
GO:0070646 protein modification by small protein removal 1.52% (2/132) 4.2 0.005169 0.018485
GO:0004819 glutamine-tRNA ligase activity 0.76% (1/132) 7.2 0.006797 0.021923
GO:0003911 DNA ligase (NAD+) activity 0.76% (1/132) 7.2 0.006797 0.021923
GO:0042575 DNA polymerase complex 0.76% (1/132) 7.2 0.006797 0.021923
GO:0017069 snRNA binding 0.76% (1/132) 7.2 0.006797 0.021923
GO:0006425 glutaminyl-tRNA aminoacylation 0.76% (1/132) 7.2 0.006797 0.021923
GO:0032039 integrator complex 0.76% (1/132) 7.2 0.006797 0.021923
GO:0030623 U5 snRNA binding 0.76% (1/132) 7.2 0.006797 0.021923
GO:0017070 U6 snRNA binding 0.76% (1/132) 7.2 0.006797 0.021923
GO:0043625 delta DNA polymerase complex 0.76% (1/132) 7.2 0.006797 0.021923
GO:0008094 ATP-dependent activity, acting on DNA 1.52% (2/132) 4.03 0.006532 0.023108
GO:0034645 cellular macromolecule biosynthetic process 4.55% (6/132) 1.79 0.008005 0.02557
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.52% (2/132) 3.81 0.008847 0.027988
GO:0140657 ATP-dependent activity 3.03% (4/132) 2.26 0.009937 0.031135
GO:0009058 biosynthetic process 6.82% (9/132) 1.29 0.01181 0.036654
GO:0016779 nucleotidyltransferase activity 2.27% (3/132) 2.64 0.012534 0.038182
GO:0009059 macromolecule biosynthetic process 4.55% (6/132) 1.65 0.012511 0.03847
GO:0044249 cellular biosynthetic process 6.06% (8/132) 1.36 0.013242 0.039968
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 0.76% (1/132) 6.2 0.013548 0.040155
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 0.76% (1/132) 6.2 0.013548 0.040155
GO:0008654 phospholipid biosynthetic process 1.52% (2/132) 3.45 0.0144 0.042301
GO:0005575 cellular_component 13.64% (18/132) 0.79 0.015373 0.044759
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_11 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_22 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_23 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_58 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_127 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_139 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_145 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.041 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_193 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_220 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_241 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_257 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_7 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_49 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_76 0.043 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_102 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_112 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_116 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_1 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_114 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_131 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_141 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.045 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_156 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_174 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_203 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_242 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_244 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_265 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_274 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_289 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_295 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_299 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_302 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_9 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_15 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_22 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_44 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_75 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_93 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_110 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_119 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_132 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_154 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_158 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_165 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_184 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (132) (download table)

InterPro Domains

GO Terms

Family Terms