Coexpression cluster: Cluster_233 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005634 nucleus 64.79% (46/71) 0.95 0.0 5.3e-05
GO:0097159 organic cyclic compound binding 30.99% (22/71) 1.54 2e-06 0.000614
GO:1901363 heterocyclic compound binding 30.99% (22/71) 1.55 2e-06 0.000827
GO:0003676 nucleic acid binding 25.35% (18/71) 1.73 5e-06 0.000875
GO:0036211 protein modification process 19.72% (14/71) 1.86 2.3e-05 0.002486
GO:0006464 cellular protein modification process 19.72% (14/71) 1.86 2.3e-05 0.002486
GO:0016570 histone modification 9.86% (7/71) 2.96 3.3e-05 0.003087
GO:0005829 cytosol 19.72% (14/71) 1.87 2.2e-05 0.00328
GO:0051239 regulation of multicellular organismal process 11.27% (8/71) 2.59 5.5e-05 0.004559
GO:0006338 chromatin remodeling 4.23% (3/71) 5.19 7.6e-05 0.005171
GO:0008213 protein alkylation 8.45% (6/71) 3.02 9.8e-05 0.005238
GO:0006479 protein methylation 8.45% (6/71) 3.02 9.8e-05 0.005238
GO:0050793 regulation of developmental process 14.08% (10/71) 2.16 7.5e-05 0.005576
GO:0016571 histone methylation 8.45% (6/71) 3.04 9.3e-05 0.005771
GO:0043412 macromolecule modification 19.72% (14/71) 1.57 0.000213 0.009908
GO:0031323 regulation of cellular metabolic process 22.54% (16/71) 1.43 0.000202 0.010063
GO:0019538 protein metabolic process 23.94% (17/71) 1.35 0.000248 0.010298
GO:2000026 regulation of multicellular organismal development 9.86% (7/71) 2.5 0.000235 0.010301
GO:0044267 cellular protein metabolic process 19.72% (14/71) 1.52 0.000288 0.011295
GO:0140098 catalytic activity, acting on RNA 7.04% (5/71) 3.09 0.000305 0.011373
GO:0140640 catalytic activity, acting on a nucleic acid 8.45% (6/71) 2.64 0.000413 0.014672
GO:0019222 regulation of metabolic process 23.94% (17/71) 1.28 0.000435 0.01476
GO:0043227 membrane-bounded organelle 78.87% (56/71) 0.39 0.000619 0.017103
GO:0000159 protein phosphatase type 2A complex 2.82% (2/71) 5.8 0.00058 0.017298
GO:0043231 intracellular membrane-bounded organelle 78.87% (56/71) 0.39 0.000611 0.017538
GO:0043170 macromolecule metabolic process 32.39% (23/71) 0.98 0.000691 0.017772
GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex 2.82% (2/71) 5.7 0.000668 0.017791
GO:0006325 chromatin organization 7.04% (5/71) 2.91 0.000555 0.018
GO:0018193 peptidyl-amino acid modification 8.45% (6/71) 2.54 0.000579 0.018012
GO:0060255 regulation of macromolecule metabolic process 21.13% (15/71) 1.28 0.000976 0.020222
GO:0043226 organelle 78.87% (56/71) 0.38 0.000908 0.020532
GO:0140535 intracellular protein-containing complex 7.04% (5/71) 2.73 0.000964 0.020539
GO:0051052 regulation of DNA metabolic process 4.23% (3/71) 3.96 0.000959 0.021044
GO:0050789 regulation of biological process 32.39% (23/71) 0.95 0.000908 0.021157
GO:0043229 intracellular organelle 78.87% (56/71) 0.38 0.000897 0.02159
GO:0005730 nucleolus 7.04% (5/71) 2.76 0.000879 0.021857
GO:0140101 catalytic activity, acting on a tRNA 4.23% (3/71) 3.87 0.001156 0.023314
GO:0006807 nitrogen compound metabolic process 33.8% (24/71) 0.87 0.001483 0.026979
GO:0101005 deubiquitinase activity 2.82% (2/71) 5.15 0.001452 0.027082
GO:0004843 thiol-dependent deubiquitinase 2.82% (2/71) 5.15 0.001452 0.027082
GO:0048580 regulation of post-embryonic development 8.45% (6/71) 2.3 0.001388 0.027254
GO:0032259 methylation 8.45% (6/71) 2.21 0.001891 0.029397
GO:0043414 macromolecule methylation 8.45% (6/71) 2.21 0.001891 0.029397
GO:1903293 phosphatase complex 2.82% (2/71) 4.96 0.001876 0.030432
GO:0008242 omega peptidase activity 2.82% (2/71) 4.96 0.001876 0.030432
GO:0008287 protein serine/threonine phosphatase complex 2.82% (2/71) 4.96 0.001876 0.030432
GO:0050794 regulation of cellular process 28.17% (20/71) 0.98 0.001722 0.030586
GO:0051171 regulation of nitrogen compound metabolic process 18.31% (13/71) 1.32 0.001848 0.032054
GO:0098813 nuclear chromosome segregation 4.23% (3/71) 3.42 0.002802 0.032158
GO:0022402 cell cycle process 8.45% (6/71) 2.1 0.00274 0.032442
GO:0051276 chromosome organization 5.63% (4/71) 2.78 0.002794 0.032572
GO:0009909 regulation of flower development 7.04% (5/71) 2.45 0.002233 0.032668
GO:0045132 meiotic chromosome segregation 4.23% (3/71) 3.44 0.00273 0.032846
GO:0048831 regulation of shoot system development 7.04% (5/71) 2.39 0.002699 0.033012
GO:2000011 regulation of adaxial/abaxial pattern formation 1.41% (1/71) 8.61 0.002567 0.033021
GO:0033749 histone H3-methyl-arginine-3 demethylase activity 1.41% (1/71) 8.61 0.002567 0.033021
GO:0033746 histone H3-methyl-arginine-2 demethylase activity 1.41% (1/71) 8.61 0.002567 0.033021
GO:0032042 mitochondrial DNA metabolic process 1.41% (1/71) 8.61 0.002567 0.033021
GO:0061982 meiosis I cell cycle process 4.23% (3/71) 3.52 0.002321 0.0333
GO:1902494 catalytic complex 8.45% (6/71) 2.16 0.002232 0.033304
GO:0019783 ubiquitin-like protein-specific protease activity 2.82% (2/71) 4.7 0.002698 0.033551
GO:0006399 tRNA metabolic process 4.23% (3/71) 3.45 0.002659 0.033619
GO:0034968 histone lysine methylation 5.63% (4/71) 2.75 0.002975 0.033627
GO:0018022 peptidyl-lysine methylation 5.63% (4/71) 2.75 0.003021 0.033642
GO:0019219 regulation of nucleobase-containing compound metabolic process 16.9% (12/71) 1.34 0.002451 0.033867
GO:0003677 DNA binding 14.08% (10/71) 1.53 0.002227 0.033912
GO:0090304 nucleic acid metabolic process 16.9% (12/71) 1.34 0.002441 0.034351
GO:0006310 DNA recombination 5.63% (4/71) 2.72 0.003261 0.035774
GO:0080090 regulation of primary metabolic process 18.31% (13/71) 1.22 0.003309 0.035777
GO:0010468 regulation of gene expression 18.31% (13/71) 1.21 0.003497 0.037266
GO:1903046 meiotic cell cycle process 5.63% (4/71) 2.68 0.003565 0.037457
GO:0065007 biological regulation 32.39% (23/71) 0.8 0.003916 0.040569
GO:1901564 organonitrogen compound metabolic process 26.76% (19/71) 0.9 0.004432 0.04468
GO:0007059 chromosome segregation 4.23% (3/71) 3.19 0.004401 0.044975
GO:0007131 reciprocal meiotic recombination 4.23% (3/71) 3.1 0.00521 0.047981
GO:0140527 reciprocal homologous recombination 4.23% (3/71) 3.1 0.00521 0.047981
GO:0016805 dipeptidase activity 1.41% (1/71) 7.61 0.005128 0.048426
GO:0043985 histone H4-R3 methylation 1.41% (1/71) 7.61 0.005128 0.048426
GO:0045694 regulation of embryo sac egg cell differentiation 1.41% (1/71) 7.61 0.005128 0.048426
GO:0004815 aspartate-tRNA ligase activity 1.41% (1/71) 7.61 0.005128 0.048426
GO:2000241 regulation of reproductive process 7.04% (5/71) 2.19 0.004892 0.04866
GO:0035825 homologous recombination 4.23% (3/71) 3.08 0.005425 0.049353
GO:0044260 cellular macromolecule metabolic process 23.94% (17/71) 0.94 0.005504 0.049473
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_23 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_36 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_44 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_49 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_56 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_84 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_86 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_112 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_157 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_167 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_184 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_213 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_214 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_218 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_278 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_324 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_9 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_128 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_165 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_5 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_78 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_88 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_171 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_163 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_169 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_245 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_274 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_276 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_39 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_125 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_158 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (71) (download table)

InterPro Domains

GO Terms

Family Terms