Coexpression cluster: Cluster_112 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 10.87% (15/138) 2.69 0.0 2e-06
GO:0034470 ncRNA processing 5.07% (7/138) 4.17 0.0 8e-06
GO:0016070 RNA metabolic process 8.7% (12/138) 2.88 0.0 9e-06
GO:0006396 RNA processing 5.8% (8/138) 3.39 1e-06 5e-05
GO:0140098 catalytic activity, acting on RNA 5.8% (8/138) 3.26 2e-06 7.8e-05
GO:0008033 tRNA processing 3.62% (5/138) 4.42 3e-06 9.6e-05
GO:0034660 ncRNA metabolic process 5.07% (7/138) 3.49 3e-06 0.000101
GO:0140640 catalytic activity, acting on a nucleic acid 6.52% (9/138) 2.87 4e-06 0.000105
GO:0006139 nucleobase-containing compound metabolic process 10.87% (15/138) 1.97 7e-06 0.000154
GO:0046483 heterocycle metabolic process 10.87% (15/138) 1.85 1.8e-05 0.000347
GO:0006725 cellular aromatic compound metabolic process 10.87% (15/138) 1.86 1.7e-05 0.000357
GO:1901360 organic cyclic compound metabolic process 10.87% (15/138) 1.82 2.4e-05 0.00042
GO:0003676 nucleic acid binding 11.59% (16/138) 1.7 3.2e-05 0.000519
GO:0140102 catalytic activity, acting on a rRNA 1.45% (2/138) 7.01 6e-05 0.000833
GO:0008649 rRNA methyltransferase activity 1.45% (2/138) 7.01 6e-05 0.000833
GO:0006399 tRNA metabolic process 3.62% (5/138) 3.42 0.000103 0.001334
GO:0009451 RNA modification 2.9% (4/138) 3.84 0.00017 0.001966
GO:0034641 cellular nitrogen compound metabolic process 10.87% (15/138) 1.55 0.000185 0.002028
GO:0008168 methyltransferase activity 4.35% (6/138) 2.88 0.00017 0.002081
GO:0016741 transferase activity, transferring one-carbon groups 4.35% (6/138) 2.77 0.000254 0.00264
GO:0008173 RNA methyltransferase activity 2.17% (3/138) 4.27 0.000476 0.004719
GO:0032259 methylation 2.17% (3/138) 4.07 0.000728 0.00688
GO:0030983 mismatched DNA binding 1.45% (2/138) 4.84 0.002087 0.018869
GO:0006298 mismatch repair 1.45% (2/138) 4.55 0.003155 0.027346
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.45% (2/138) 4.42 0.003767 0.031343
GO:0097159 organic cyclic compound binding 16.67% (23/138) 0.83 0.0045 0.032276
GO:1901363 heterocyclic compound binding 16.67% (23/138) 0.83 0.0045 0.032276
GO:0006400 tRNA modification 1.45% (2/138) 4.31 0.00443 0.034124
GO:0000160 phosphorelay signal transduction system 1.45% (2/138) 4.31 0.00443 0.034124
GO:0000469 cleavage involved in rRNA processing 0.72% (1/138) 7.01 0.007779 0.038523
GO:0070476 rRNA (guanine-N7)-methylation 0.72% (1/138) 7.01 0.007779 0.038523
GO:0090501 RNA phosphodiester bond hydrolysis 0.72% (1/138) 7.01 0.007779 0.038523
GO:0090305 nucleic acid phosphodiester bond hydrolysis 0.72% (1/138) 7.01 0.007779 0.038523
GO:0036265 RNA (guanine-N7)-methylation 0.72% (1/138) 7.01 0.007779 0.038523
GO:0031167 rRNA methylation 0.72% (1/138) 7.01 0.007779 0.038523
GO:0070475 rRNA base methylation 0.72% (1/138) 7.01 0.007779 0.038523
GO:0016435 rRNA (guanine) methyltransferase activity 0.72% (1/138) 7.01 0.007779 0.038523
GO:0005542 folic acid binding 0.72% (1/138) 7.01 0.007779 0.038523
GO:0000154 rRNA modification 0.72% (1/138) 7.01 0.007779 0.038523
GO:0030014 CCR4-NOT complex 0.72% (1/138) 7.01 0.007779 0.038523
GO:0072341 modified amino acid binding 0.72% (1/138) 7.01 0.007779 0.038523
GO:0003690 double-stranded DNA binding 1.45% (2/138) 3.84 0.008471 0.040974
GO:0006364 rRNA processing 1.45% (2/138) 3.76 0.009419 0.043538
GO:0016072 rRNA metabolic process 1.45% (2/138) 3.76 0.009419 0.043538
GO:0004540 ribonuclease activity 1.45% (2/138) 4.01 0.006711 0.046533
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_38 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_11 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_12 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_14 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_19 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_21 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_45 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_49 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_50 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_67 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_74 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_76 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_96 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_131 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_138 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_141 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_146 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_148 0.039 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_153 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_154 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_160 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_163 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_168 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_171 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_173 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_61 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_163 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_1 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_47 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_9 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_104 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (138) (download table)

InterPro Domains

GO Terms

Family Terms