AT1G17920

Description : homeodomain GLABROUS 12

Gene families : OG_01_0012383 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G17920
Cluster	HCCA: Cluster_139

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	RCA	Interproscan
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010091	trichome branching	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin assembly	RCA	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045787	positive regulation of cell cycle	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048451	petal formation	RCA	Interproscan
BP	GO:0048453	sepal formation	RCA	Interproscan
BP	GO:0048497	maintenance of floral organ identity	IGI	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090700	maintenance of plant organ identity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
CC	GO:0000815	ESCRT III complex	IEP	HCCA
MF	GO:0001716	L-amino-acid oxidase activity	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004040	amidase activity	IEP	HCCA
MF	GO:0004630	phospholipase D activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	HCCA
MF	GO:0004829	threonine-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005677	chromatin silencing complex	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005798	Golgi-associated vesicle	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0006482	protein demethylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006596	polyamine biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0006986	response to unfolded protein	IEP	HCCA
BP	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	IEP	HCCA
BP	GO:0007009	plasma membrane organization	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008143	poly(A) binding	IEP	HCCA
BP	GO:0008214	protein dealkylation	IEP	HCCA
MF	GO:0008734	L-aspartate oxidase activity	IEP	HCCA
MF	GO:0008792	arginine decarboxylase activity	IEP	HCCA
MF	GO:0008864	formyltetrahydrofolate deformylase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
MF	GO:0009378	four-way junction helicase activity	IEP	HCCA
BP	GO:0009395	phospholipid catabolic process	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009435	NAD biosynthetic process	IEP	HCCA
BP	GO:0009445	putrescine metabolic process	IEP	HCCA
BP	GO:0009446	putrescine biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009720	detection of hormone stimulus	IEP	HCCA
BP	GO:0009726	detection of endogenous stimulus	IEP	HCCA
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010398	xylogalacturonan metabolic process	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0015922	aspartate oxidase activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016572	histone phosphorylation	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
BP	GO:0016577	histone demethylation	IEP	HCCA
CC	GO:0016591	RNA polymerase II, holoenzyme	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0022403	cell cycle phase	IEP	HCCA
BP	GO:0022610	biological adhesion	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030133	transport vesicle	IEP	HCCA
CC	GO:0030135	coated vesicle	IEP	HCCA
CC	GO:0030136	clathrin-coated vesicle	IEP	HCCA
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031050	dsRNA processing	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031058	positive regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031062	positive regulation of histone methylation	IEP	HCCA
BP	GO:0031109	microtubule polymerization or depolymerization	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031401	positive regulation of protein modification process	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
CC	GO:0031519	PcG protein complex	IEP	HCCA
BP	GO:0032386	regulation of intracellular transport	IEP	HCCA
BP	GO:0032388	positive regulation of intracellular transport	IEP	HCCA
MF	GO:0032451	demethylase activity	IEP	HCCA
MF	GO:0032452	histone demethylase activity	IEP	HCCA
MF	GO:0032454	histone H3-methyl-lysine-9 demethylase activity	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0032922	circadian regulation of gene expression	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033157	regulation of intracellular protein transport	IEP	HCCA
BP	GO:0033169	histone H3-K9 demethylation	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
BP	GO:0042439	ethanolamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042631	cellular response to water deprivation	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
MF	GO:0043424	protein histidine kinase binding	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044111	formation of structure involved in a symbiotic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0044848	biological phase	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0046785	microtubule polymerization	IEP	HCCA
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046825	regulation of protein export from nucleus	IEP	HCCA
BP	GO:0046827	positive regulation of protein export from nucleus	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0047412	N-(long-chain-acyl)ethanolamine deacylase activity	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
CC	GO:0048471	perinuclear region of cytoplasm	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051050	positive regulation of transport	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051222	positive regulation of protein transport	IEP	HCCA
BP	GO:0051223	regulation of protein transport	IEP	HCCA
BP	GO:0051322	anaphase	IEP	HCCA
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0052093	formation of specialized structure for nutrient acquisition	IEP	HCCA
BP	GO:0052096	formation of syncytium involving giant cell for nutrient acquisition	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0070076	histone lysine demethylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070201	regulation of establishment of protein localization	IEP	HCCA
BP	GO:0070291	N-acylethanolamine metabolic process	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
MF	GO:0070717	poly-purine tract binding	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	HCCA
BP	GO:0070919	production of siRNA involved in gene silencing by small RNA	IEP	HCCA
BP	GO:0070988	demethylation	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071462	cellular response to water stimulus	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0080001	mucilage extrusion from seed coat	IEP	HCCA
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140457	protein demethylase activity	IEP	HCCA
BP	GO:0140458	pre-transcriptional gene silencing by RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1902347	response to strigolactone	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903829	positive regulation of protein localization	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000693	positive regulation of seed maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	26	77
IPR002913	START_lipid-bd_dom	216	437

External Links

PLAZA 3.0 Dicots	AT1G17920

AT1G17920

Expression Profile

Co-expression Networks

Functional Annotation