AT4G26230

Description : Ribosomal protein L31e family protein

Gene families : OG_01_0001305 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G26230
Cluster	HCCA: Cluster_207

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g489153	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g18320.1	No alias	component RPL31 of LSU proteome component	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_8090V3.1	No alias	Ribosomal protein L31e family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_7550V3.1	No alias	Ribosomal protein L31e family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_34390V3.1	No alias	Ribosomal protein L31e family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_8980V3.1	No alias	Ribosomal protein L31e family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_16490V3.1	No alias	Ribosomal protein L31e family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01743.1	No alias	component eL31 of LSU proteome component	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	HCCA
MF	GO:0000049	tRNA binding	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005665	RNA polymerase II, core complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006354	DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
CC	GO:0010369	chromocenter	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000054	Ribosomal_L31e	10	91

External Links

PLAZA 3.0 Dicots	AT4G26230

AT4G26230

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation