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  5. AT1G31360

AT1G31360


Description : RECQ helicase L2


Gene families : OG_01_0008819 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008819_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G31360
Cluster HCCA: Cluster_139


Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006281 DNA repair IC Interproscan
BP GO:0006310 DNA recombination IC Interproscan
BP GO:0006396 RNA processing RCA Interproscan
MF GO:0009378 four-way junction helicase activity IDA Interproscan
BP GO:0010413 glucuronoxylan metabolic process RCA Interproscan
CC GO:0016592 mediator complex IDA Interproscan
MF GO:0043138 3'-5' DNA helicase activity IDA Interproscan
BP GO:0045492 xylan biosynthetic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000104 succinate dehydrogenase activity IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0001716 L-amino-acid oxidase activity IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004040 amidase activity IEP HCCA
MF GO:0004630 phospholipase D activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004829 threonine-tRNA ligase activity IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006121 mitochondrial electron transport, succinate to ubiquinone IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006435 threonyl-tRNA aminoacylation IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
MF GO:0008734 L-aspartate oxidase activity IEP HCCA
MF GO:0008792 arginine decarboxylase activity IEP HCCA
MF GO:0008864 formyltetrahydrofolate deformylase activity IEP HCCA
BP GO:0009395 phospholipid catabolic process IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009720 detection of hormone stimulus IEP HCCA
BP GO:0009726 detection of endogenous stimulus IEP HCCA
BP GO:0009729 detection of brassinosteroid stimulus IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015922 aspartate oxidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
CC GO:0016591 RNA polymerase II, holoenzyme IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022403 cell cycle phase IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031109 microtubule polymerization or depolymerization IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032388 positive regulation of intracellular transport IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
MF GO:0032452 histone demethylase activity IEP HCCA
MF GO:0032454 histone H3-methyl-lysine-9 demethylase activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0032922 circadian regulation of gene expression IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042439 ethanolamine-containing compound metabolic process IEP HCCA
BP GO:0042631 cellular response to water deprivation IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0044111 formation of structure involved in a symbiotic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0044848 biological phase IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
CC GO:0045257 succinate dehydrogenase complex (ubiquinone) IEP HCCA
CC GO:0045281 succinate dehydrogenase complex IEP HCCA
CC GO:0045283 fumarate reductase complex IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046785 microtubule polymerization IEP HCCA
BP GO:0046822 regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046825 regulation of protein export from nucleus IEP HCCA
BP GO:0046827 positive regulation of protein export from nucleus IEP HCCA
MF GO:0047412 N-(long-chain-acyl)ethanolamine deacylase activity IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051222 positive regulation of protein transport IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051322 anaphase IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0052093 formation of specialized structure for nutrient acquisition IEP HCCA
BP GO:0052096 formation of syncytium involving giant cell for nutrient acquisition IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
BP GO:0070291 N-acylethanolamine metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070887 cellular response to chemical stimulus IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071229 cellular response to acid chemical IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071462 cellular response to water stimulus IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080001 mucilage extrusion from seed coat IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090316 positive regulation of intracellular protein transport IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140457 protein demethylase activity IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902347 response to strigolactone IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903829 positive regulation of protein localization IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1904951 positive regulation of establishment of protein localization IEP HCCA
InterPro domains Description Start Stop
IPR018982 RQC_domain 482 586
IPR011545 DEAD/DEAH_box_helicase_dom 92 260
IPR001650 Helicase_C 303 407
IPR032284 RecQ_Zn-bd 420 476
IPR002121 HRDC_dom 600 659
PLAZA 3.0 Dicots AT1G31360