Coexpression cluster: Cluster_247 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 50.0% (27/54) 1.86 0.0 0.0
GO:0009507 chloroplast 46.3% (25/54) 1.77 0.0 2e-06
GO:0031969 chloroplast membrane 7.41% (4/54) 4.73 1.6e-05 0.00314
GO:0009706 chloroplast inner membrane 5.56% (3/54) 5.13 8.8e-05 0.007498
GO:0009528 plastid inner membrane 5.56% (3/54) 5.03 0.000107 0.007999
GO:0009526 plastid envelope 12.96% (7/54) 2.73 8.4e-05 0.008372
GO:0031967 organelle envelope 12.96% (7/54) 2.57 0.000163 0.008842
GO:0031975 envelope 12.96% (7/54) 2.57 0.000163 0.008842
GO:0015095 magnesium ion transmembrane transporter activity 3.7% (2/54) 6.83 0.000134 0.008844
GO:0090304 nucleic acid metabolic process 22.22% (12/54) 1.74 0.000187 0.009276
GO:0009941 chloroplast envelope 12.96% (7/54) 2.74 8e-05 0.009481
GO:0008252 nucleotidase activity 3.7% (2/54) 6.42 0.000244 0.011182
GO:0016556 mRNA modification 7.41% (4/54) 4.15 7.6e-05 0.011388
GO:0045036 protein targeting to chloroplast 5.56% (3/54) 4.44 0.000366 0.012124
GO:0072598 protein localization to chloroplast 5.56% (3/54) 4.44 0.000366 0.012124
GO:0072596 establishment of protein localization to chloroplast 5.56% (3/54) 4.44 0.000366 0.012124
GO:0009657 plastid organization 9.26% (5/54) 3.08 0.000311 0.01237
GO:0016070 RNA metabolic process 18.52% (10/54) 1.89 0.000304 0.012958
GO:0045037 protein import into chloroplast stroma 3.7% (2/54) 6.0 0.000441 0.013842
GO:0009668 plastid membrane organization 7.41% (4/54) 3.38 0.000598 0.015493
GO:0010027 thylakoid membrane organization 7.41% (4/54) 3.38 0.000598 0.015493
GO:0016071 mRNA metabolic process 9.26% (5/54) 2.88 0.000577 0.016384
GO:0016043 cellular component organization 24.07% (13/54) 1.47 0.000566 0.016867
GO:0061024 membrane organization 7.41% (4/54) 3.29 0.000759 0.018099
GO:0016853 isomerase activity 7.41% (4/54) 3.3 0.000733 0.018192
GO:0032553 ribonucleotide binding 11.11% (6/54) 2.32 0.001232 0.021599
GO:0071840 cellular component organization or biogenesis 24.07% (13/54) 1.35 0.001274 0.021692
GO:0035639 purine ribonucleoside triphosphate binding 11.11% (6/54) 2.36 0.001058 0.021748
GO:0009570 chloroplast stroma 11.11% (6/54) 2.38 0.000987 0.021793
GO:0009532 plastid stroma 11.11% (6/54) 2.38 0.000987 0.021793
GO:0006399 tRNA metabolic process 5.56% (3/54) 3.84 0.00121 0.021855
GO:0042170 plastid membrane 9.26% (5/54) 2.7 0.001032 0.021964
GO:0017076 purine nucleotide binding 11.11% (6/54) 2.33 0.001182 0.022011
GO:0097367 carbohydrate derivative binding 11.11% (6/54) 2.3 0.001338 0.022149
GO:0009658 chloroplast organization 7.41% (4/54) 3.13 0.001134 0.02253
GO:0032555 purine ribonucleotide binding 11.11% (6/54) 2.34 0.001172 0.022531
GO:0042794 plastid rRNA transcription 1.85% (1/54) 9.0 0.001953 0.023275
GO:0004458 D-lactate dehydrogenase (cytochrome) activity 1.85% (1/54) 9.0 0.001953 0.023275
GO:0035452 extrinsic component of plastid membrane 1.85% (1/54) 9.0 0.001953 0.023275
GO:0009974 zeinoxanthin epsilon hydroxylase activity 1.85% (1/54) 9.0 0.001953 0.023275
GO:0072374 carotene epsilon hydroxylase activity 1.85% (1/54) 9.0 0.001953 0.023275
GO:0016898 oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor 1.85% (1/54) 9.0 0.001953 0.023275
GO:0019154 glycolate dehydrogenase activity 1.85% (1/54) 9.0 0.001953 0.023275
GO:0071806 protein transmembrane transport 5.56% (3/54) 3.74 0.001489 0.023351
GO:0065002 intracellular protein transmembrane transport 5.56% (3/54) 3.74 0.001489 0.023351
GO:0019866 organelle inner membrane 5.56% (3/54) 3.57 0.002067 0.02416
GO:0005524 ATP binding 9.26% (5/54) 2.54 0.001677 0.025634
GO:0046351 disaccharide biosynthetic process 3.7% (2/54) 4.83 0.002259 0.025896
GO:0032559 adenyl ribonucleotide binding 9.26% (5/54) 2.5 0.001886 0.026764
GO:0030554 adenyl nucleotide binding 9.26% (5/54) 2.5 0.001886 0.026764
GO:0006139 nucleobase-containing compound metabolic process 22.22% (12/54) 1.36 0.001935 0.026817
GO:0043168 anion binding 11.11% (6/54) 2.2 0.00186 0.02771
GO:0043226 organelle 79.63% (43/54) 0.39 0.002522 0.027838
GO:0043229 intracellular organelle 79.63% (43/54) 0.39 0.002498 0.028087
GO:0015693 magnesium ion transport 1.85% (1/54) 8.0 0.003902 0.037505
GO:0046608 carotenoid isomerase activity 1.85% (1/54) 8.0 0.003902 0.037505
GO:1900871 chloroplast mRNA modification 1.85% (1/54) 8.0 0.003902 0.037505
GO:0004457 lactate dehydrogenase activity 1.85% (1/54) 8.0 0.003902 0.037505
GO:0080085 signal recognition particle, chloroplast targeting 1.85% (1/54) 8.0 0.003902 0.037505
GO:0009312 oligosaccharide biosynthetic process 3.7% (2/54) 4.42 0.003985 0.037702
GO:0006396 RNA processing 11.11% (6/54) 1.98 0.00406 0.037809
GO:0009790 embryo development 9.26% (5/54) 2.28 0.003646 0.038805
GO:0009793 embryo development ending in seed dormancy 9.26% (5/54) 2.28 0.003646 0.038805
GO:0009451 RNA modification 7.41% (4/54) 2.66 0.003731 0.039007
GO:0043227 membrane-bounded organelle 77.78% (42/54) 0.37 0.004717 0.041342
GO:0043231 intracellular membrane-bounded organelle 77.78% (42/54) 0.37 0.004674 0.041575
GO:0016866 intramolecular transferase activity 3.7% (2/54) 4.3 0.004662 0.042095
GO:0043170 macromolecule metabolic process 31.48% (17/54) 0.94 0.004591 0.042098
GO:1901265 nucleoside phosphate binding 11.11% (6/54) 1.86 0.005898 0.045068
GO:0000166 nucleotide binding 11.11% (6/54) 1.86 0.005898 0.045068
GO:0004839 ubiquitin activating enzyme activity 1.85% (1/54) 7.42 0.005847 0.04585
GO:0031304 intrinsic component of mitochondrial inner membrane 1.85% (1/54) 7.42 0.005847 0.04585
GO:0009303 rRNA transcription 1.85% (1/54) 7.42 0.005847 0.04585
GO:0019388 galactose catabolic process 1.85% (1/54) 7.42 0.005847 0.04585
GO:0009662 etioplast organization 1.85% (1/54) 7.42 0.005847 0.04585
GO:0008253 5'-nucleotidase activity 1.85% (1/54) 7.42 0.005847 0.04585
GO:0032365 intracellular lipid transport 1.85% (1/54) 7.42 0.005847 0.04585
GO:0036094 small molecule binding 12.96% (7/54) 1.7 0.005517 0.047653
GO:0005984 disaccharide metabolic process 5.56% (3/54) 2.99 0.006392 0.048223
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_24 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_139 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_232 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_240 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_102 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_156 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_61 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_112 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_119 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_120 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_163 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_105 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_120 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_141 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_170 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_205 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_223 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_242 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_247 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_267 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_25 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_74 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_156 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_168 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_179 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (54) (download table)

InterPro Domains

GO Terms

Family Terms