Coexpression cluster: Cluster_262 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 25.93% (14/54) 1.96 9e-06 0.001754
GO:0046483 heterocycle metabolic process 31.48% (17/54) 1.64 1.4e-05 0.00215
GO:0043170 macromolecule metabolic process 40.74% (22/54) 1.31 1.8e-05 0.00227
GO:0006139 nucleobase-containing compound metabolic process 29.63% (16/54) 1.77 8e-06 0.002614
GO:0034641 cellular nitrogen compound metabolic process 31.48% (17/54) 1.55 3e-05 0.003073
GO:0006807 nitrogen compound metabolic process 42.59% (23/54) 1.21 3.5e-05 0.003116
GO:0016570 histone modification 12.96% (7/54) 3.35 5e-06 0.003272
GO:0009909 regulation of flower development 11.11% (6/54) 3.11 6.7e-05 0.00413
GO:0016070 RNA metabolic process 20.37% (11/54) 2.03 6.2e-05 0.004262
GO:0044260 cellular macromolecule metabolic process 33.33% (18/54) 1.42 5.6e-05 0.004312
GO:0048831 regulation of shoot system development 11.11% (6/54) 3.05 8.5e-05 0.004383
GO:0044237 cellular metabolic process 50.0% (27/54) 0.98 8.2e-05 0.004602
GO:0006397 mRNA processing 7.41% (4/54) 4.02 0.000109 0.0048
GO:1901360 organic cyclic compound metabolic process 31.48% (17/54) 1.41 0.000103 0.004889
GO:0044238 primary metabolic process 46.3% (25/54) 1.01 0.000131 0.005064
GO:0006396 RNA processing 14.81% (8/54) 2.39 0.000129 0.005297
GO:0008213 protein alkylation 9.26% (5/54) 3.15 0.000246 0.00585
GO:0006479 protein methylation 9.26% (5/54) 3.15 0.000246 0.00585
GO:0048449 floral organ formation 7.41% (4/54) 3.87 0.000163 0.005933
GO:0008152 metabolic process 51.85% (28/54) 0.86 0.000262 0.005976
GO:0031047 gene silencing by RNA 7.41% (4/54) 3.68 0.000272 0.006003
GO:0003006 developmental process involved in reproduction 22.22% (12/54) 1.72 0.000205 0.006037
GO:0006725 cellular aromatic compound metabolic process 29.63% (16/54) 1.4 0.000197 0.006068
GO:0000419 RNA polymerase V complex 3.7% (2/54) 6.3 0.000288 0.006125
GO:2000241 regulation of reproductive process 11.11% (6/54) 2.84 0.000183 0.006269
GO:0000418 RNA polymerase IV complex 3.7% (2/54) 6.42 0.000244 0.006271
GO:0008380 RNA splicing 9.26% (5/54) 3.22 0.000196 0.006358
GO:0016246 RNA interference 5.56% (3/54) 4.5 0.000322 0.006417
GO:0044267 cellular protein metabolic process 22.22% (12/54) 1.7 0.000241 0.006454
GO:0048580 regulation of post-embryonic development 11.11% (6/54) 2.69 0.00032 0.006577
GO:0016571 histone methylation 9.26% (5/54) 3.17 0.000235 0.006587
GO:2000026 regulation of multicellular organismal development 11.11% (6/54) 2.68 0.000342 0.006592
GO:0051567 histone H3-K9 methylation 7.41% (4/54) 3.52 0.000417 0.007566
GO:0061647 histone H3-K9 modification 7.41% (4/54) 3.52 0.000417 0.007566
GO:0032259 methylation 11.11% (6/54) 2.61 0.000442 0.007583
GO:0043414 macromolecule methylation 11.11% (6/54) 2.61 0.000442 0.007583
GO:0071704 organic substance metabolic process 48.15% (26/54) 0.87 0.000486 0.007886
GO:0035194 post-transcriptional gene silencing by RNA 5.56% (3/54) 4.3 0.000483 0.008049
GO:0051239 regulation of multicellular organismal process 11.11% (6/54) 2.57 0.000511 0.008085
GO:0006464 cellular protein modification process 18.52% (10/54) 1.77 0.000571 0.008198
GO:0036211 protein modification process 18.52% (10/54) 1.77 0.000571 0.008198
GO:0018205 peptidyl-lysine modification 9.26% (5/54) 2.91 0.000533 0.008229
GO:1905393 plant organ formation 7.41% (4/54) 3.4 0.000564 0.008494
GO:0043412 macromolecule modification 20.37% (11/54) 1.61 0.000741 0.010163
GO:0006259 DNA metabolic process 11.11% (6/54) 2.46 0.000739 0.010369
GO:0000398 mRNA splicing, via spliceosome 5.56% (3/54) 4.02 0.000858 0.011507
GO:0018193 peptidyl-amino acid modification 9.26% (5/54) 2.67 0.001103 0.012156
GO:0000375 RNA splicing, via transesterification reactions 5.56% (3/54) 3.86 0.001178 0.012317
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.56% (3/54) 3.86 0.001178 0.012317
GO:0009086 methionine biosynthetic process 5.56% (3/54) 3.97 0.000939 0.012325
GO:0018022 peptidyl-lysine methylation 7.41% (4/54) 3.14 0.001099 0.012325
GO:0034654 nucleobase-containing compound biosynthetic process 11.11% (6/54) 2.34 0.001143 0.012369
GO:0055029 nuclear DNA-directed RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012464
GO:0030880 RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012464
GO:0000428 DNA-directed RNA polymerase complex 3.7% (2/54) 5.36 0.001091 0.012464
GO:0010608 posttranscriptional regulation of gene expression 7.41% (4/54) 3.17 0.001014 0.01303
GO:0022414 reproductive process 22.22% (12/54) 1.46 0.001036 0.013043
GO:0006555 methionine metabolic process 5.56% (3/54) 3.9 0.001084 0.013116
GO:0034968 histone lysine methylation 7.41% (4/54) 3.15 0.001081 0.013343
GO:0050793 regulation of developmental process 12.96% (7/54) 2.04 0.001474 0.015163
GO:0009067 aspartate family amino acid biosynthetic process 5.56% (3/54) 3.73 0.001526 0.015438
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.017717
GO:0010420 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.017717
GO:0010426 DNA methylation on cytosine within a CHH sequence 1.85% (1/54) 9.0 0.001953 0.017717
GO:0051325 interphase 1.85% (1/54) 9.0 0.001953 0.017717
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 1.85% (1/54) 9.0 0.001953 0.017717
GO:0043227 membrane-bounded organelle 79.63% (43/54) 0.41 0.001859 0.018207
GO:0043231 intracellular membrane-bounded organelle 79.63% (43/54) 0.41 0.00184 0.018316
GO:0009066 aspartate family amino acid metabolic process 5.56% (3/54) 3.47 0.002555 0.021899
GO:0043226 organelle 79.63% (43/54) 0.39 0.002522 0.021919
GO:0044271 cellular nitrogen compound biosynthetic process 14.81% (8/54) 1.74 0.00251 0.022124
GO:0043229 intracellular organelle 79.63% (43/54) 0.39 0.002498 0.022335
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 5.56% (3/54) 3.44 0.002715 0.022944
GO:0018130 heterocycle biosynthetic process 12.96% (7/54) 1.86 0.002947 0.023615
GO:0048646 anatomical structure formation involved in morphogenesis 7.41% (4/54) 2.75 0.002939 0.023862
GO:0032774 RNA biosynthetic process 7.41% (4/54) 2.76 0.002871 0.023934
GO:1901564 organonitrogen compound metabolic process 29.63% (16/54) 1.05 0.00291 0.023935
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.7% (2/54) 4.61 0.003065 0.024244
GO:0016441 posttranscriptional gene silencing 5.56% (3/54) 3.32 0.003412 0.026646
GO:0099116 tRNA 5'-end processing 1.85% (1/54) 8.0 0.003902 0.027355
GO:0034471 ncRNA 5'-end processing 1.85% (1/54) 8.0 0.003902 0.027355
GO:0001682 tRNA 5'-leader removal 1.85% (1/54) 8.0 0.003902 0.027355
GO:0016074 sno(s)RNA metabolic process 1.85% (1/54) 8.0 0.003902 0.027355
GO:0008676 3-deoxy-8-phosphooctulonate synthase activity 1.85% (1/54) 8.0 0.003902 0.027355
GO:0043144 sno(s)RNA processing 1.85% (1/54) 8.0 0.003902 0.027355
GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 1.85% (1/54) 8.0 0.003902 0.027355
GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process 1.85% (1/54) 8.0 0.003902 0.027355
GO:0019538 protein metabolic process 22.22% (12/54) 1.24 0.003802 0.029326
GO:0006306 DNA methylation 5.56% (3/54) 3.17 0.004572 0.031346
GO:0006305 DNA alkylation 5.56% (3/54) 3.17 0.004572 0.031346
GO:0044728 DNA methylation or demethylation 5.56% (3/54) 3.15 0.004723 0.031673
GO:0006304 DNA modification 5.56% (3/54) 3.14 0.004799 0.031838
GO:0016071 mRNA metabolic process 7.41% (4/54) 2.56 0.004703 0.031889
GO:0000966 RNA 5'-end processing 1.85% (1/54) 7.42 0.005847 0.03719
GO:0005663 DNA replication factor C complex 1.85% (1/54) 7.42 0.005847 0.03719
GO:0031538 negative regulation of anthocyanin metabolic process 1.85% (1/54) 7.42 0.005847 0.03719
GO:0032502 developmental process 25.93% (14/54) 1.05 0.005762 0.03782
GO:0007275 multicellular organism development 11.11% (6/54) 1.81 0.007037 0.044302
GO:0009987 cellular process 53.7% (29/54) 0.56 0.00724 0.04467
GO:0010629 negative regulation of gene expression 7.41% (4/54) 2.38 0.007325 0.044747
GO:0006270 DNA replication initiation 3.7% (2/54) 3.98 0.007195 0.04484
GO:0031386 protein tag 1.85% (1/54) 7.0 0.007788 0.045333
GO:0043433 negative regulation of DNA-binding transcription factor activity 1.85% (1/54) 7.0 0.007788 0.045333
GO:0031053 primary miRNA processing 1.85% (1/54) 7.0 0.007788 0.045333
GO:0033588 elongator holoenzyme complex 1.85% (1/54) 7.0 0.007788 0.045333
GO:0000339 RNA cap binding 1.85% (1/54) 7.0 0.007788 0.045333
GO:0048856 anatomical structure development 16.67% (9/54) 1.35 0.008027 0.046284
GO:0009892 negative regulation of metabolic process 9.26% (5/54) 2.0 0.008229 0.04658
GO:0032446 protein modification by small protein conjugation 5.56% (3/54) 2.86 0.00816 0.04662
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_5 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_22 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_51 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_54 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_72 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_81 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_103 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_130 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_139 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_187 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_204 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_218 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_232 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_242 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_292 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_38 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_70 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_20 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_80 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_31 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_47 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_138 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_211 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_234 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_251 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_265 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_273 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_285 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_292 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_98 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_156 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_179 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (54) (download table)

InterPro Domains

GO Terms

Family Terms