Coexpression cluster: Cluster_9 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 10.17% (12/118) 4.71 0.0 0.0
GO:0043436 oxoacid metabolic process 10.17% (12/118) 4.01 0.0 0.0
GO:0006082 organic acid metabolic process 10.17% (12/118) 4.01 0.0 0.0
GO:0019752 carboxylic acid metabolic process 10.17% (12/118) 4.02 0.0 0.0
GO:0051082 unfolded protein binding 5.08% (6/118) 6.23 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 5.08% (6/118) 5.29 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 5.08% (6/118) 5.23 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 5.93% (7/118) 4.34 0.0 1e-06
GO:0043039 tRNA aminoacylation 5.08% (6/118) 4.91 0.0 1e-06
GO:0043038 amino acid activation 5.08% (6/118) 4.91 0.0 1e-06
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.08% (6/118) 4.86 0.0 1e-06
GO:0004812 aminoacyl-tRNA ligase activity 5.08% (6/118) 4.86 0.0 1e-06
GO:0006457 protein folding 4.24% (5/118) 5.31 0.0 2e-06
GO:0046394 carboxylic acid biosynthetic process 5.08% (6/118) 4.65 0.0 2e-06
GO:0016053 organic acid biosynthetic process 5.08% (6/118) 4.5 0.0 4e-06
GO:0140098 catalytic activity, acting on RNA 6.78% (8/118) 3.49 1e-06 8e-06
GO:0016874 ligase activity 5.93% (7/118) 3.79 1e-06 9e-06
GO:0044281 small molecule metabolic process 10.17% (12/118) 2.56 1e-06 1.1e-05
GO:1901607 alpha-amino acid biosynthetic process 3.39% (4/118) 5.33 2e-06 2.7e-05
GO:0006399 tRNA metabolic process 5.08% (6/118) 3.91 3e-06 3.1e-05
GO:0044283 small molecule biosynthetic process 5.08% (6/118) 3.79 5e-06 4.7e-05
GO:1901605 alpha-amino acid metabolic process 3.39% (4/118) 4.91 8e-06 8.2e-05
GO:0140640 catalytic activity, acting on a nucleic acid 6.78% (8/118) 2.93 1.1e-05 0.0001
GO:0034660 ncRNA metabolic process 5.08% (6/118) 3.5 1.5e-05 0.000139
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.69% (2/118) 7.23 4.4e-05 0.000366
GO:0031072 heat shock protein binding 1.69% (2/118) 7.23 4.4e-05 0.000366
GO:0005488 binding 27.97% (33/118) 0.85 0.000377 0.003028
GO:0009073 aromatic amino acid family biosynthetic process 1.69% (2/118) 5.91 0.000433 0.00324
GO:0005515 protein binding 11.86% (14/118) 1.5 0.000429 0.003328
GO:0016070 RNA metabolic process 5.93% (7/118) 2.33 0.000512 0.003704
GO:0006547 histidine metabolic process 1.69% (2/118) 5.65 0.000647 0.004252
GO:0000105 histidine biosynthetic process 1.69% (2/118) 5.65 0.000647 0.004252
GO:0051087 chaperone binding 1.69% (2/118) 5.65 0.000647 0.004252
GO:0009072 aromatic amino acid family metabolic process 1.69% (2/118) 5.23 0.001197 0.007212
GO:0030554 adenyl nucleotide binding 11.86% (14/118) 1.35 0.001134 0.007238
GO:0017076 purine nucleotide binding 12.71% (15/118) 1.27 0.001309 0.007282
GO:1901363 heterocyclic compound binding 18.64% (22/118) 1.0 0.001277 0.00729
GO:0097159 organic cyclic compound binding 18.64% (22/118) 1.0 0.001277 0.00729
GO:0003674 molecular_function 40.68% (48/118) 0.57 0.001186 0.007351
GO:0036094 small molecule binding 13.56% (16/118) 1.16 0.002033 0.011027
GO:0043168 anion binding 12.71% (15/118) 1.14 0.003249 0.015666
GO:0000166 nucleotide binding 12.71% (15/118) 1.14 0.003249 0.015666
GO:1901265 nucleoside phosphate binding 12.71% (15/118) 1.14 0.003249 0.015666
GO:0035639 purine ribonucleoside triphosphate binding 11.86% (14/118) 1.19 0.003338 0.015744
GO:0032555 purine ribonucleotide binding 11.86% (14/118) 1.18 0.003469 0.016015
GO:0005524 ATP binding 11.02% (13/118) 1.26 0.00303 0.016037
GO:0032559 adenyl ribonucleotide binding 11.02% (13/118) 1.25 0.003159 0.016323
GO:0090304 nucleic acid metabolic process 5.93% (7/118) 1.82 0.003864 0.017114
GO:1901566 organonitrogen compound biosynthetic process 5.08% (6/118) 2.0 0.003947 0.01713
GO:0097367 carbohydrate derivative binding 11.86% (14/118) 1.16 0.004036 0.017174
GO:0032553 ribonucleotide binding 11.86% (14/118) 1.16 0.003851 0.017411
GO:0043167 ion binding 15.25% (18/118) 0.97 0.00459 0.019154
GO:0016836 hydro-lyase activity 1.69% (2/118) 4.23 0.004953 0.020278
GO:0009098 leucine biosynthetic process 0.85% (1/118) 7.23 0.006651 0.020619
GO:0031227 intrinsic component of endoplasmic reticulum membrane 0.85% (1/118) 7.23 0.006651 0.020619
GO:0003852 2-isopropylmalate synthase activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:0006551 leucine metabolic process 0.85% (1/118) 7.23 0.006651 0.020619
GO:0004664 prephenate dehydratase activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:0004665 prephenate dehydrogenase (NADP+) activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:0030176 integral component of endoplasmic reticulum membrane 0.85% (1/118) 7.23 0.006651 0.020619
GO:0008977 prephenate dehydrogenase (NAD+) activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 0.85% (1/118) 7.23 0.006651 0.020619
GO:0009094 L-phenylalanine biosynthetic process 0.85% (1/118) 7.23 0.006651 0.020619
GO:0006571 tyrosine biosynthetic process 0.85% (1/118) 7.23 0.006651 0.020619
GO:0003333 amino acid transmembrane transport 0.85% (1/118) 7.23 0.006651 0.020619
GO:0006865 amino acid transport 0.85% (1/118) 7.23 0.006651 0.020619
GO:0006433 prolyl-tRNA aminoacylation 0.85% (1/118) 7.23 0.006651 0.020619
GO:0004827 proline-tRNA ligase activity 0.85% (1/118) 7.23 0.006651 0.020619
GO:0016835 carbon-oxygen lyase activity 1.69% (2/118) 4.06 0.00626 0.025156
GO:0006725 cellular aromatic compound metabolic process 7.63% (9/118) 1.35 0.009131 0.027908
GO:0009058 biosynthetic process 7.63% (9/118) 1.34 0.009452 0.028488
GO:1901360 organic cyclic compound metabolic process 7.63% (9/118) 1.3 0.010943 0.03253
GO:0009082 branched-chain amino acid biosynthetic process 0.85% (1/118) 6.23 0.013259 0.035964
GO:0006570 tyrosine metabolic process 0.85% (1/118) 6.23 0.013259 0.035964
GO:0006558 L-phenylalanine metabolic process 0.85% (1/118) 6.23 0.013259 0.035964
GO:0009081 branched-chain amino acid metabolic process 0.85% (1/118) 6.23 0.013259 0.035964
GO:0003725 double-stranded RNA binding 0.85% (1/118) 6.23 0.013259 0.035964
GO:0005759 mitochondrial matrix 0.85% (1/118) 6.23 0.013259 0.035964
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 0.85% (1/118) 6.23 0.013259 0.035964
GO:0009987 cellular process 20.34% (24/118) 0.67 0.013984 0.037464
GO:1903825 organic acid transmembrane transport 0.85% (1/118) 5.65 0.019822 0.044807
GO:0015849 organic acid transport 0.85% (1/118) 5.65 0.019822 0.044807
GO:1905039 carboxylic acid transmembrane transport 0.85% (1/118) 5.65 0.019822 0.044807
GO:0000774 adenyl-nucleotide exchange factor activity 0.85% (1/118) 5.65 0.019822 0.044807
GO:0042803 protein homodimerization activity 0.85% (1/118) 5.65 0.019822 0.044807
GO:0042802 identical protein binding 0.85% (1/118) 5.65 0.019822 0.044807
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 0.85% (1/118) 5.65 0.019822 0.044807
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 0.85% (1/118) 5.65 0.019822 0.044807
GO:0004045 aminoacyl-tRNA hydrolase activity 0.85% (1/118) 5.65 0.019822 0.044807
GO:0006528 asparagine metabolic process 0.85% (1/118) 5.65 0.019822 0.044807
GO:0006529 asparagine biosynthetic process 0.85% (1/118) 5.65 0.019822 0.044807
GO:0060590 ATPase regulator activity 0.85% (1/118) 5.65 0.019822 0.044807
GO:0006383 transcription by RNA polymerase III 0.85% (1/118) 5.65 0.019822 0.044807
GO:0098772 molecular function regulator 1.69% (2/118) 3.23 0.019104 0.049946
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_42 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_43 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_140 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_145 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_203 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_226 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_233 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_241 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_3 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_29 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_39 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_76 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_96 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_127 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_131 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_135 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_153 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_158 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_160 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_169 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_5 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_16 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_26 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_69 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_77 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_79 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_112 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_120 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_17 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_92 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_118 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_120 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_121 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_139 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_141 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_163 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_295 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_300 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_22 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_39 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_83 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_84 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_157 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_171 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_180 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (118) (download table)

InterPro Domains

GO Terms

Family Terms