Coexpression cluster: Cluster_28 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034470 ncRNA processing 7.19% (11/153) 4.67 0.0 0.0
GO:0016072 rRNA metabolic process 5.23% (8/153) 5.61 0.0 0.0
GO:0006364 rRNA processing 5.23% (8/153) 5.61 0.0 0.0
GO:0016070 RNA metabolic process 11.11% (17/153) 3.23 0.0 0.0
GO:0006396 RNA processing 7.84% (12/153) 3.83 0.0 0.0
GO:0034660 ncRNA metabolic process 7.19% (11/153) 3.99 0.0 0.0
GO:0003676 nucleic acid binding 15.69% (24/153) 2.14 0.0 0.0
GO:0090304 nucleic acid metabolic process 11.11% (17/153) 2.72 0.0 0.0
GO:0005634 nucleus 6.54% (10/153) 3.54 0.0 0.0
GO:0005730 nucleolus 2.61% (4/153) 6.54 0.0 0.0
GO:0043226 organelle 9.15% (14/153) 2.66 0.0 1e-06
GO:0043229 intracellular organelle 9.15% (14/153) 2.67 0.0 1e-06
GO:0043231 intracellular membrane-bounded organelle 6.54% (10/153) 3.23 0.0 2e-06
GO:0043227 membrane-bounded organelle 6.54% (10/153) 3.21 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 11.76% (18/153) 2.09 0.0 3e-06
GO:0006725 cellular aromatic compound metabolic process 11.76% (18/153) 1.97 1e-06 9e-06
GO:0046483 heterocycle metabolic process 11.76% (18/153) 1.96 1e-06 9e-06
GO:1901360 organic cyclic compound metabolic process 11.76% (18/153) 1.93 1e-06 1.2e-05
GO:0042254 ribosome biogenesis 2.61% (4/153) 5.4 2e-06 1.5e-05
GO:0022613 ribonucleoprotein complex biogenesis 2.61% (4/153) 5.4 2e-06 1.5e-05
GO:0005488 binding 30.72% (47/153) 0.99 2e-06 1.5e-05
GO:0044085 cellular component biogenesis 2.61% (4/153) 5.27 2e-06 2.1e-05
GO:0030684 preribosome 1.96% (3/153) 5.86 1.2e-05 9.8e-05
GO:0034641 cellular nitrogen compound metabolic process 11.76% (18/153) 1.67 1.5e-05 0.000114
GO:1990904 ribonucleoprotein complex 2.61% (4/153) 4.4 3.4e-05 0.000243
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.61% (4/153) 4.4 3.4e-05 0.000243
GO:0034062 5'-3' RNA polymerase activity 2.61% (4/153) 4.33 4.1e-05 0.000262
GO:0097747 RNA polymerase activity 2.61% (4/153) 4.33 4.1e-05 0.000262
GO:0140098 catalytic activity, acting on RNA 4.58% (7/153) 2.92 3.9e-05 0.000266
GO:0097159 organic cyclic compound binding 19.61% (30/153) 1.07 7.3e-05 0.00043
GO:1901363 heterocyclic compound binding 19.61% (30/153) 1.07 7.3e-05 0.00043
GO:0006351 transcription, DNA-templated 2.61% (4/153) 3.73 0.000226 0.001217
GO:0097659 nucleic acid-templated transcription 2.61% (4/153) 3.73 0.000226 0.001217
GO:0008175 tRNA methyltransferase activity 1.31% (2/153) 6.27 0.00022 0.001261
GO:0008168 methyltransferase activity 3.92% (6/153) 2.73 0.000297 0.001555
GO:0140640 catalytic activity, acting on a nucleic acid 4.58% (7/153) 2.36 0.000445 0.002142
GO:0016741 transferase activity, transferring one-carbon groups 3.92% (6/153) 2.62 0.000441 0.002182
GO:0032040 small-subunit processome 1.31% (2/153) 5.86 0.000438 0.002228
GO:0005515 protein binding 10.46% (16/153) 1.32 0.000717 0.003365
GO:0032774 RNA biosynthetic process 2.61% (4/153) 3.13 0.001121 0.005131
GO:0003723 RNA binding 3.92% (6/153) 2.24 0.001738 0.007757
GO:0016779 nucleotidyltransferase activity 2.61% (4/153) 2.95 0.001783 0.007767
GO:0008033 tRNA processing 1.96% (3/153) 3.54 0.002153 0.009161
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.31% (2/153) 4.27 0.004608 0.019165
GO:0005575 cellular_component 13.07% (20/153) 0.9 0.004976 0.020234
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 0.65% (1/153) 6.86 0.008624 0.030945
GO:0034457 Mpp10 complex 0.65% (1/153) 6.86 0.008624 0.030945
GO:0004749 ribose phosphate diphosphokinase activity 0.65% (1/153) 6.86 0.008624 0.030945
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 0.65% (1/153) 6.86 0.008624 0.030945
GO:0016426 tRNA (adenine) methyltransferase activity 0.65% (1/153) 6.86 0.008624 0.030945
GO:0110165 cellular anatomical entity 10.46% (16/153) 0.96 0.008057 0.032051
GO:0140101 catalytic activity, acting on a tRNA 1.96% (3/153) 2.74 0.010208 0.035923
GO:0030488 tRNA methylation 0.65% (1/153) 5.86 0.017174 0.040817
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.65% (1/153) 5.86 0.017174 0.040817
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.65% (1/153) 5.86 0.017174 0.040817
GO:0030490 maturation of SSU-rRNA 0.65% (1/153) 5.86 0.017174 0.040817
GO:0043527 tRNA methyltransferase complex 0.65% (1/153) 5.86 0.017174 0.040817
GO:0034708 methyltransferase complex 0.65% (1/153) 5.86 0.017174 0.040817
GO:0031515 tRNA (m1A) methyltransferase complex 0.65% (1/153) 5.86 0.017174 0.040817
GO:0030515 snoRNA binding 0.65% (1/153) 5.86 0.017174 0.040817
GO:0016423 tRNA (guanine) methyltransferase activity 0.65% (1/153) 5.86 0.017174 0.040817
GO:0030688 preribosome, small subunit precursor 0.65% (1/153) 5.86 0.017174 0.040817
GO:0003674 molecular_function 35.95% (55/153) 0.39 0.012337 0.041808
GO:0071840 cellular component organization or biogenesis 2.61% (4/153) 2.17 0.012163 0.041996
GO:0008173 RNA methyltransferase activity 1.31% (2/153) 3.54 0.01268 0.04219
GO:0000166 nucleotide binding 10.46% (16/153) 0.86 0.015488 0.043606
GO:1901265 nucleoside phosphate binding 10.46% (16/153) 0.86 0.015488 0.043606
GO:0043168 anion binding 10.46% (16/153) 0.86 0.015488 0.043606
GO:0032553 ribonucleotide binding 9.8% (15/153) 0.89 0.015896 0.044075
GO:0006399 tRNA metabolic process 1.96% (3/153) 2.54 0.015037 0.044384
GO:0017076 purine nucleotide binding 9.8% (15/153) 0.9 0.014817 0.044451
GO:0019001 guanyl nucleotide binding 2.61% (4/153) 2.09 0.014713 0.044876
GO:0005525 GTP binding 2.61% (4/153) 2.09 0.014713 0.044876
GO:0032561 guanyl ribonucleotide binding 2.61% (4/153) 2.09 0.014713 0.044876
GO:0097367 carbohydrate derivative binding 9.8% (15/153) 0.88 0.0166 0.045341
GO:0035639 purine ribonucleoside triphosphate binding 9.8% (15/153) 0.91 0.013921 0.045491
GO:0032555 purine ribonucleotide binding 9.8% (15/153) 0.9 0.014428 0.04632
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.058 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_109 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.039 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.116 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.047 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_228 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.231 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_69 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_71 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_80 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_127 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_135 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_1 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_47 0.139 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_121 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_174 0.095 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_191 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_265 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_292 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_9 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_67 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_93 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_110 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_111 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_116 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_151 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_154 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_169 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_172 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_179 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_180 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (153) (download table)

InterPro Domains

GO Terms

Family Terms