Coexpression cluster: Cluster_6 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006270 DNA replication initiation 7.0% (7/100) 7.24 0.0 0.0
GO:0003677 DNA binding 18.0% (18/100) 3.69 0.0 0.0
GO:0006259 DNA metabolic process 12.0% (12/100) 4.65 0.0 0.0
GO:0005524 ATP binding 22.0% (22/100) 2.53 0.0 0.0
GO:0006260 DNA replication 7.0% (7/100) 5.89 0.0 0.0
GO:0030554 adenyl nucleotide binding 22.0% (22/100) 2.45 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 22.0% (22/100) 2.45 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 22.0% (22/100) 2.31 0.0 0.0
GO:0000808 origin recognition complex 4.0% (4/100) 7.6 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 23.0% (23/100) 2.2 0.0 0.0
GO:0017076 purine nucleotide binding 22.0% (22/100) 2.24 0.0 0.0
GO:0032555 purine ribonucleotide binding 22.0% (22/100) 2.24 0.0 0.0
GO:0032553 ribonucleotide binding 22.0% (22/100) 2.23 0.0 0.0
GO:0097367 carbohydrate derivative binding 22.0% (22/100) 2.2 0.0 0.0
GO:0009987 cellular process 35.0% (35/100) 1.52 0.0 0.0
GO:1901265 nucleoside phosphate binding 22.0% (22/100) 2.08 0.0 0.0
GO:0000166 nucleotide binding 22.0% (22/100) 2.08 0.0 0.0
GO:0043168 anion binding 22.0% (22/100) 2.09 0.0 0.0
GO:0036094 small molecule binding 22.0% (22/100) 2.02 0.0 0.0
GO:0005634 nucleus 8.0% (8/100) 4.05 0.0 0.0
GO:0003676 nucleic acid binding 18.0% (18/100) 2.26 0.0 0.0
GO:0097159 organic cyclic compound binding 30.0% (30/100) 1.55 0.0 0.0
GO:1901363 heterocyclic compound binding 30.0% (30/100) 1.55 0.0 0.0
GO:0043170 macromolecule metabolic process 23.0% (23/100) 1.78 0.0 1e-06
GO:0043231 intracellular membrane-bounded organelle 8.0% (8/100) 3.68 0.0 2e-06
GO:0043227 membrane-bounded organelle 8.0% (8/100) 3.67 0.0 2e-06
GO:0005488 binding 40.0% (40/100) 1.12 0.0 2e-06
GO:0090304 nucleic acid metabolic process 12.0% (12/100) 2.68 0.0 2e-06
GO:0043167 ion binding 25.0% (25/100) 1.6 0.0 3e-06
GO:0008017 microtubule binding 5.0% (5/100) 4.84 1e-06 5e-06
GO:0003777 microtubule motor activity 5.0% (5/100) 4.64 2e-06 1e-05
GO:0015631 tubulin binding 5.0% (5/100) 4.57 2e-06 1.2e-05
GO:0007018 microtubule-based movement 5.0% (5/100) 4.57 2e-06 1.2e-05
GO:0006928 movement of cell or subcellular component 5.0% (5/100) 4.53 2e-06 1.3e-05
GO:0003774 cytoskeletal motor activity 5.0% (5/100) 4.5 3e-06 1.4e-05
GO:0006139 nucleobase-containing compound metabolic process 12.0% (12/100) 2.39 3e-06 1.6e-05
GO:0043229 intracellular organelle 10.0% (10/100) 2.68 4e-06 1.9e-05
GO:0043226 organelle 10.0% (10/100) 2.68 4e-06 1.9e-05
GO:0044237 cellular metabolic process 23.0% (23/100) 1.5 4e-06 1.9e-05
GO:0051276 chromosome organization 4.0% (4/100) 5.14 5e-06 2.1e-05
GO:0008092 cytoskeletal protein binding 5.0% (5/100) 4.34 5e-06 2.1e-05
GO:0007017 microtubule-based process 5.0% (5/100) 4.31 5e-06 2.3e-05
GO:0046483 heterocycle metabolic process 12.0% (12/100) 2.24 9e-06 3.7e-05
GO:0006725 cellular aromatic compound metabolic process 12.0% (12/100) 2.24 9e-06 3.7e-05
GO:1901360 organic cyclic compound metabolic process 12.0% (12/100) 2.19 1.2e-05 5e-05
GO:0044815 DNA packaging complex 4.0% (4/100) 4.74 1.4e-05 5.8e-05
GO:0009059 macromolecule biosynthetic process 9.0% (9/100) 2.64 1.5e-05 5.8e-05
GO:0008150 biological_process 35.0% (35/100) 0.99 2.2e-05 8.3e-05
GO:0005664 nuclear origin of replication recognition complex 2.0% (2/100) 7.6 2.6e-05 9.8e-05
GO:0006269 DNA replication, synthesis of RNA primer 2.0% (2/100) 7.6 2.6e-05 9.8e-05
GO:0140657 ATP-dependent activity 6.0% (6/100) 3.24 4.2e-05 0.000153
GO:0016043 cellular component organization 6.0% (6/100) 3.15 6e-05 0.000213
GO:0071704 organic substance metabolic process 23.0% (23/100) 1.24 7.1e-05 0.000248
GO:0032991 protein-containing complex 9.0% (9/100) 2.34 7.3e-05 0.000251
GO:0000775 chromosome, centromeric region 2.0% (2/100) 7.02 7.8e-05 0.000256
GO:0098687 chromosomal region 2.0% (2/100) 7.02 7.8e-05 0.000256
GO:0006996 organelle organization 4.0% (4/100) 4.14 7.7e-05 0.000259
GO:0034641 cellular nitrogen compound metabolic process 12.0% (12/100) 1.83 0.000135 0.000433
GO:0071840 cellular component organization or biogenesis 6.0% (6/100) 2.84 0.000198 0.000625
GO:0008152 metabolic process 23.0% (23/100) 1.11 0.000293 0.000907
GO:0034645 cellular macromolecule biosynthetic process 7.0% (7/100) 2.41 0.000351 0.001071
GO:0000786 nucleosome 3.0% (3/100) 4.38 0.000395 0.001186
GO:0032993 protein-DNA complex 3.0% (3/100) 4.33 0.000439 0.001297
GO:0044249 cellular biosynthetic process 9.0% (9/100) 1.93 0.000605 0.001758
GO:1901576 organic substance biosynthetic process 9.0% (9/100) 1.84 0.000933 0.002631
GO:0071103 DNA conformation change 2.0% (2/100) 5.43 0.000923 0.002641
GO:0022402 cell cycle process 2.0% (2/100) 5.28 0.00115 0.003145
GO:0005694 chromosome 2.0% (2/100) 5.28 0.00115 0.003145
GO:0006325 chromatin organization 2.0% (2/100) 5.02 0.001675 0.004516
GO:0006298 mismatch repair 2.0% (2/100) 4.9 0.001973 0.005027
GO:0030983 mismatched DNA binding 2.0% (2/100) 4.9 0.001973 0.005027
GO:0009058 biosynthetic process 9.0% (9/100) 1.69 0.001926 0.005118
GO:0005575 cellular_component 17.0% (17/100) 1.11 0.001966 0.00515
GO:0006807 nitrogen compound metabolic process 16.0% (16/100) 1.11 0.002641 0.006638
GO:0045132 meiotic chromosome segregation 1.0% (1/100) 7.6 0.005149 0.010081
GO:0000796 condensin complex 1.0% (1/100) 7.6 0.005149 0.010081
GO:0030261 chromosome condensation 1.0% (1/100) 7.6 0.005149 0.010081
GO:0006323 DNA packaging 1.0% (1/100) 7.6 0.005149 0.010081
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 1.0% (1/100) 7.6 0.005149 0.010081
GO:0007076 mitotic chromosome condensation 1.0% (1/100) 7.6 0.005149 0.010081
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 1.0% (1/100) 7.6 0.005149 0.010081
GO:1905463 negative regulation of DNA duplex unwinding 1.0% (1/100) 7.6 0.005149 0.010081
GO:0098813 nuclear chromosome segregation 1.0% (1/100) 7.6 0.005149 0.010081
GO:1905775 negative regulation of DNA helicase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:1905774 regulation of DNA helicase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:1905462 regulation of DNA duplex unwinding 1.0% (1/100) 7.6 0.005149 0.010081
GO:0051097 negative regulation of helicase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:0051095 regulation of helicase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:0006333 chromatin assembly or disassembly 1.0% (1/100) 7.6 0.005149 0.010081
GO:0042555 MCM complex 1.0% (1/100) 7.6 0.005149 0.010081
GO:0003964 RNA-directed DNA polymerase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:0061731 ribonucleoside-diphosphate reductase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:1903046 meiotic cell cycle process 1.0% (1/100) 7.6 0.005149 0.010081
GO:0003896 DNA primase activity 1.0% (1/100) 7.6 0.005149 0.010081
GO:0003674 molecular_function 45.0% (45/100) 0.49 0.004479 0.011108
GO:0003690 double-stranded DNA binding 2.0% (2/100) 3.79 0.009094 0.017619
GO:0000278 mitotic cell cycle 1.0% (1/100) 6.6 0.010272 0.019299
GO:2001251 negative regulation of chromosome organization 1.0% (1/100) 6.6 0.010272 0.019299
GO:0007059 chromosome segregation 1.0% (1/100) 6.6 0.010272 0.019299
GO:0005515 protein binding 13.0% (13/100) 1.04 0.010502 0.019533
GO:0008080 N-acetyltransferase activity 2.0% (2/100) 3.47 0.013984 0.025753
GO:0016410 N-acyltransferase activity 2.0% (2/100) 3.43 0.014757 0.026911
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 1.0% (1/100) 6.02 0.015369 0.027486
GO:0007049 cell cycle 1.0% (1/100) 6.02 0.015369 0.027486
GO:0016407 acetyltransferase activity 2.0% (2/100) 3.32 0.017185 0.030443
GO:0140097 catalytic activity, acting on DNA 2.0% (2/100) 3.28 0.01803 0.031637
GO:0044238 primary metabolic process 16.0% (16/100) 0.81 0.018613 0.032355
GO:0010639 negative regulation of organelle organization 1.0% (1/100) 5.6 0.020439 0.03425
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 1.0% (1/100) 5.6 0.020439 0.03425
GO:0033044 regulation of chromosome organization 1.0% (1/100) 5.6 0.020439 0.03425
GO:0051129 negative regulation of cellular component organization 1.0% (1/100) 5.6 0.020439 0.03425
GO:0043086 negative regulation of catalytic activity 1.0% (1/100) 5.28 0.025484 0.041579
GO:0022414 reproductive process 1.0% (1/100) 5.28 0.025484 0.041579
GO:0044092 negative regulation of molecular function 1.0% (1/100) 5.28 0.025484 0.041579
GO:1903047 mitotic cell cycle process 1.0% (1/100) 5.02 0.030503 0.049336
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_38 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_44 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_49 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_58 0.044 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_110 0.149 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_133 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_194 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_257 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_268 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_6 0.048 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_44 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_52 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.073 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_92 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_105 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_137 0.041 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_20 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_54 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_14 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_16 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_48 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_52 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_55 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_72 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_140 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_154 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_160 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_164 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_169 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_175 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_219 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_224 0.058 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_265 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_273 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_285 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_52 0.055 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_99 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_139 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_140 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_159 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (100) (download table)

InterPro Domains

GO Terms

Family Terms